1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaactcacttaatagttatgtaaattgaaatgaagtggttaacttccactgagcatccatgtgcaactaattttttttttttttaaattcaaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG
species | Vitis vinifera |
transcript | Vv11s0016g04970.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAG GTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATEST: gi|110387459|gb|EC952124.1|EC952124
genomic: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAGgtcattctct ... aaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCAT
EST: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAG GTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATEST: gi|110689922|gb|EE066580.1|EE066580
genomic: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAGgtcattctct ... aaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCAT
EST: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAG GTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATEST: gi|161714699|gb|FC064483.1|FC064483
genomic: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAGgtcattctct ... aaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCAT
EST: TTTAAGCTTCAAGACACTGCAAGTGTCACCCACAATACCCAATTATTCAG GTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATEST: gi|351034937|gb|FQ458294.1|FQ458294
genomic: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAGgtcattctct ... aaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCAT
EST: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAG GTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATEST: gi|110728735|gb|EE104563.1|EE104563
genomic: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAGgtcattctct ... aaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCAT
EST: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAG GTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCAT
genomic: TTTAAGCTTCAAGACACTGCAAGTGTCAGCCACAATACCCAATTATTCAGgtcattctct ... aaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCAT
ccactgagcatccatgtgcaactaattttttttttttttaaattcaaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG
aactaat putative branch site (score: 2)
atgtgcaactaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactcacttaatagttatgtaaattgaaatgaagtggttaacttccactgagcatccatgtgcaactaattttttttttttttaaattcaaaatcccagGTTTTCATTTGATCCTACTGCCAAGCTGGGTCTTGACATTGCTTCATGCATTCTTACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
aaactca
- - - - - - - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - - - - - - - cttccac
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatcca