1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atacaaaaacctcaataatctttcagatgaatttttggccttgtttacctttctcccattttcaaataactccattttttattttttatttgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATGGATCCATCATACCTTCTGAAC
species | Vitis vinifera |
transcript | Vv11s0016g00900.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAG GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATEST: gi|30129010|gb|CB914349.1|CB914349
genomic: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctt ... tgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAAT
EST: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAG GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATEST: gi|110701993|gb|EE080197.1|EE080197
genomic: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctt ... tgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAAT
EST: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAG GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATEST: gi|110725486|gb|EE102039.1|EE102039
genomic: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctt ... tgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAAT
EST: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAG GAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCAACAAATAAAT
genomic: TGTCGCTGGAGATGGGGAAAATACTGGCTGAAGGAATCGGAGAGGTTCAGgtataacctt ... tgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAAT
tacctttctcccattttcaaataactccattttttattttttatttgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATGGATCCATCATACCTTCTGAAC
aaataac putative branch site (score: 2)
ctccattttttatttt CT-rich tract
attttcaaataactcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacaaaaacctcaataatctttcagatgaatttttggccttgtttacctttctcccattttcaaataactccattttttattttttatttgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATGGATCCATCATACCTTCTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- acaaaaa
- - - - -cctcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactcca