Sequence
atgc intronic sequence ATGC exonic sequencegttcagccaaatactaatatatgctttatggttattgaattaatttacacattttaaactcttaattaactaaatttccattttgcagGCAGTTGAATTGTGGTTGGTGGAGAAAGCAGTTCTCCCAATTGAGAATTCTGTAGGTGGAAGCATCCATCGTAATTATGATCTTCTCCTTGGCCACAGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g01670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G00650.1 (Glycine max), 3'ss of exon 2
--------------------------------------------------------gttcagccaaatactaatatatgctttatggttattgaattaatttacacattttaaactcttaattaactaaatttccattttgcagGCAG----TTGAATTGTGGTTGGTGGAGAAAGCAGTTCTCCCAATTGAGAATTCTGTAGGTGGAAGCATCCATCGTAATTATGATCTTCTCCTTGGCCACAGGC
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gttgcattgcttgtttcttaattaacatctctctctttctcccccccccccaccccccccacacacacacatatatata-tatatatatgatgccttgactaaaatattctgtgatgatatatttataatattcttttctgcaagCAGGCTGTCGAATCGTGGTTAGTGGATAAAGCTGTTCTACCAATCGAAAATTCTGTTGGTGGAAGCATCCACCGTAATTATGATTTACTTCTTGGACACA---
upper sequence: Vv10s0116g01670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G01610.1 (Glycine max), 3'ss of exon 3
-------gttcagccaaatactaatatatgctttatggttattgaattaatttacacattttaaactct----taattaactaaatttccattttgcagGCAGTTGAATTGTGGTTGGTGGAGAAAGCAGTTCTCCCAATTGAGAATTCTGTAGGTGGAAGCATCCATCGTAATTATGATCTTCTCCTTGGCCACAGGC
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gttccatttcttgttttattctctctctctctcactctgtgatgcattgacttgtaagttataactactgcagtgatatatttgtattcttctctgtagGCAGTTGAATTATGGTTGGTGAATAAAACTGTTCTACCCATTGAAAATTCTGTTGGTGGAAGCGTCCACCGTAATTATGACTTACTTCTTCGCCATAGGC
upper sequence: Vv10s0116g01670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G11790.2 (Arabidopsis thaliana), 3'ss of exon 3
-----gttcagccaaatactaata-tatgctttatggttattgaattaatttacacattttaaactcttaattaactaaatttccattttgcagGCAGTTGAATTGTGGTTGGTGGAGAAAGCAGTTCTCCCAATTGAGAATTCTGTAGGTGGAAGCATCCATCGTAATTATGATCTTCTCCTTGGCCACAGGC
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gttttgatttatcggtcacttctaatatattctatccctacacaaaaaggtacggtgcttta--ctatgtctttatatgattg--attcttcagGCTGTTGAGCTCTGGTTGGTGGATAAAGCAGTATTACCGATCGAGAATTCAGTAGGTGGTAGTATCCACCGTAATTATGATTTGCTTCTTCGTCATAGGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgaattaatttacacattttaaactcttaattaactaaatttccattttgcagGCAGTTGAATTGTGGTTGGTGGAGAAAGCAGTTCTCCCAATTGAGAATTCTGTAGGTGGAAGCATCCATCGTAATTATGATCTTCTCCTTGGCCACAGGC
aactaaa putative branch site (score: 2)
tttccatttt CT-rich tract
attaatttacacattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcagccaaatactaatatatgctttatggttattgaattaatttacacattttaaactcttaattaactaaatttccattttgcagGCAGTTGAATTGTGGTTGGTGGAGAAAGCAGTTCTCCCAATTGAGAATTCTGTAGGTGGAAGCATCCATCGTAATTATGATCTTCTCCTTGGCCACAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG