1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttctgtatttttgtatgatttgtcttcattcactttagatgtttcttttggcaaattgatgtgctaaagtttgtgtctttctattcaaataaaatgcagTTAAGCAAACTCCCAGTGAAATCCTTCAGCTGTAAACGCTTCAGCAACTCTATTATGGGAAGAGAACTTTGCATTGCTGAGCTCGAAGTTCAGGCAGGCA
species | Vitis vinifera |
transcript | Vv10s0116g01630.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCAGTTCCAAATGAGATGGCACACCTAAGACCCTACTTTTGCATGCTG TTAAGCAAACTCCCAGTGAAATCCTTCAGCTGTAAACGCTTCAGCAACTCTEST: gi|110423498|gb|EC989844.1|EC989844
genomic: GCTCAGTTCCAAATGAGATGGCACACCTAAGACCCTACTTTTGCATGCTGgtaccactct ... taaaatgcagTTAAGCAAACTCCCAGTGAAATCCTTCAGCTGTAAACGCTTCAGCAACTCT
EST: GCTCAGTTCCAAATGAGATGGCACACCTAAGACCCTACTTTTGCATGCTG TTAAGCAAATTCCCAGTGAAATCCTTCAGCTGTAAACGCTTCAGCAACTCT
genomic: GCTCAGTTCCAAATGAGATGGCACACCTAAGACCCTACTTTTGCATGCTGgtaccactct ... taaaatgcagTTAAGCAAACTCCCAGTGAAATCCTTCAGCTGTAAACGCTTCAGCAACTCT
cttttggcaaattgatgtgctaaagtttgtgtctttctattcaaataaaatgcagTTAAGCAAACTCCCAGTGAAATCCTTCAGCTGTAAACGCTTCAGCAACTCTATTATGGGAAGAGAACTTTGCATTGCTGAGCTCGAAGTTCAGGCAGGCA
tgctaaa putative branch site (score: 2)
tttctattcaaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctgtatttttgtatgatttgtcttcattcactttagatgtttcttttggcaaattgatgtgctaaagtttgtgtctttctattcaaataaaatgcagTTAAGCAAACTCCCAGTGAAATCCTTCAGCTGTAAACGCTTCAGCAACTCTATTATGGGAAGAGAACTTTGCATTGCTGAGCTCGAAGTTCAGGCAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaattga