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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatttcatcagcaatcagcatattttatgctttccacttatgtttcaataaaaattgggattttggaggttttgaacttcttctggatctaatgtttctctccagttgaatggcagGGCTATGGCCGAGTTACGTGTTTTAAGGCTATTTGGTAATCCCCTCGAATTCCTTCCTGAAATTTTGCCATTGCACAAACTTCGCCACTTATCCCTTGCA

Basic information

species Vitis vinifera
transcript Vv10s0116g00830.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G01850.1 (Glycine max), 3'ss of exon 3
gtcatttcatcagcaatcagcatattttatgctttccactt--atgtttcaataaaaattgggattttggaggttttgaacttcttctggatctaatgtttctctccagttgaatggcagGGCTATGGCCGAGTTACGTGTTTTAAGGCTATTTGGTAATCCCCTCGAATTCCTTCCTGAAATTTTGCCATTGCACAAACTTCGCCACTTATCCCTTGCA
                              | |||    ||  |||  |   || ||| | |   | | ||        | ||| |||||   || |||| |     |      ||||||||||||||| || ||||| ||| | ||||||||||| ||||| || || || |||||||||||||||||  | ||||||||||| ||| | || ||||||
------------------------------gtttttggtttagatgaatttgtataaactag---tctagactccacata-ttcctctggtcttattgttaccacata------tggcagGGCTATGGCTGAATTACGGGTTCTTAGGCTATTTGGAAATCCTCTTGAGTTTCTTCCTGAAATTTTGCCCCTCCACAAACTTCGACACCTTTCTCTTGCA

upper sequence: Vv10s0116g00830.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G61850.2 (Arabidopsis thaliana), 3'ss of exon 3
gtcatttcatcagcaatcagcatattttatgctttccacttatgtttcaataaaaattgggattttggaggttttgaacttcttctggatctaatgtttctctccagttgaatggcagGGCTATGGCCGAGTTACGTGTTTTAAGGCTATTTGGTAATCCCCTCGAATTCCTTCCTGAAATTTTGCCATTGCACAAACTTCGCCACTTATCCCTTGCA
                      |  ||   ||      ||  | || |  |   ||||    | ||       ||||| ||  |  ||||      |   | | |  |||||  ||||||| ||||| | ||||||  || || |||| |||||||||||||| ||||||||||| |||||||| || |||||  | ||||| ||||| || |||| |
---------------------gtcattggggcagagagctggtattactgttttaatt----tctt------cttgaagttagttaggatgctgattaagtatacgattgaaatgcagGGCGATGGCTGGGTTACGAATTCTACGGCTTTTTGGTAATCCCCTTGAATTCCTTCCGGAAATTTTACCTTTGCATCAGCTTCGTCACTTGTCTCTTGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggaggttttgaacttcttctggatctaatgtttctctccagttgaatggcagGGCTATGGCCGAGTTACGTGTTTTAAGGCTATTTGGTAATCCCCTCGAATTCCTTCCTGAAATTTTGCCATTGCACAAACTTCGCCACTTATCCCTTGCA
                         atctaat  putative branch site (score: 3)
                            taatgttt  TA-rich tract