1 5' 3' | 2 5' 3' | 3 5' 3' |
...caatttttttttttcaaaattaattttaaaaacacttctcaaacagaatgtaacattctatctcatcatatcactgctgataatttttttacttttacagTTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGTAAAAAATTGGAAAAGCCACCAGTTACCTCGCAAGAAAACCCACCACCTG
species | Vitis vinifera |
transcript | Vv10s0003g03430.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAG TTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGTEST: gi|351051968|gb|FQ450659.1|FQ450659
genomic: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAGgttcgttaca ... acttttacagTTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGT
EST: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAG TTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGTEST: gi|110372042|gb|EC936184.1|EC936184
genomic: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAGgttcgttaca ... acttttacagTTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGT
EST: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAG TTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGTEST: gi|351025540|gb|FQ435233.1|FQ435233
genomic: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAGgttcgttaca ... acttttacagTTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGT
EST: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAG TTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGTEST: gi|254917560|gb|GR903212.1|GR903212
genomic: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAGgttcgttaca ... acttttacagTTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGT
EST: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAA TTTGTCATATTCTGTGGGCTGGATGATCACTCGGAAGCAAATAAATTGCGT
genomic: TGTCAAGTTACGAGCCGCATTTGGATTCCGATGTTTTTAAGAACTTGAAGgttcgttaca ... acttttacagTTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGT
gaatgtaacattctatctcatcatatcactgctgataatttttttacttttacagTTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGTAAAAAATTGGAAAAGCCACCAGTTACCTCGCAAGAAAACCCACCACCTG
tgctgat putative branch site (score: 3)
tttttttacttttac putative PPT
tgataatttttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatttttttttttcaaaattaattttaaaaacacttctcaaacagaatgtaacattctatctcatcatatcactgctgataatttttttacttttacagTTTGTCATATTCTGTGGGCTGGATGATCACTCGGAGGCAAATAAATTGCGTAAAAAATTGGAAAAGCCACCAGTTACCTCGCAAGAAAACCCACCACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - aaattaa
- - - - - - - - - - - - - -aaaaaca
- - - - - - - - - - - - - - - - - cttctca
- - - - - - - - - - - - - - - - - - - - -aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgctg