Sequence
atgc intronic sequence ATGC exonic sequencegtatcctgcatctttctttacatttgtagacccttgtcttttaatatacttcaggtggggtggagaaaatttattagttagtttcttcatgtcgtttcagCTGAAGGAATACATTGATGACACAGAAGATTTCATTAACATTCAGCTGGTACGTGTTGTTTCTTTCTTATATGTTTGGTTCCCAGAAAGTATTAAGAAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os06g44150.1 (Oryza sativa), 3'ss of exon 3
gtatcctgc-atctttctttacatttgtagacccttgtcttttaatatacttcaggtggggtggagaaaatttattagttagtttcttcatgtcgtttcagCTGAAGGAATACATTGATGACACAGAAGATTTCATTAACATTCAGCTGGTACGTGTTGTTTCTTTCTTATATGTTTGGTTCCCAGAAAGTATTAAGAAAA
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gtaatgaaccacctctccccaaaatcccaa---ttaatcttgtttttcattactagcagt-tacaggatgtctgac---------cttcattttctttcagCTGAAGGAGTACATTGATGACACTGAAGATTTTATCAACATTCAGTTG----------------------------------------------------
upper sequence: Vv09s0018g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G064467_T01 (Zea mays), 3'ss of exon 3
gtatcctgcatctttctttacatttgtagacccttgtcttttaatatacttcaggtggggtggagaaaatttattagttagtttctt-catgtcgtttcagCTGAAGGAATACATTGATGACACAGAAGATTTCATTAACATTCAGCTGGTACGTGTTGTTTCTTTCTTATATGTTTGGTTCCCAGAAAGTATTAAGAAAA
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-------gtacaaactatgaattgtgtatatgttagctttgtt-tctgttttaca---gattattatggttgacaattttgctactcgcacattttttcagCTAAAGGAGTATATTGATGACACAGAAGATTTCATCAACATACAACTG----------------------------------------------------
upper sequence: Vv09s0018g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G170326_T02 (Zea mays), 3'ss of exon 3
gtatcctgcatctttctttacatttgtagacccttgt--cttttaata-tacttcaggtggggtggagaaaatttattagttagtttcttcatgtcgtttcagCTGAAGGAATACATTGATGACACAGAAGATTTCATTAACATTCAGCTGGTACGTGTTGTTTCTTTCTTATATGTTTGGTTCCCAGAAAGTATTAAGAAAA
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gtaccaagccatatcaccagcatgtcttaaatctggttacgtataataatactgcaataggagtcaaaggggtctgatctatttttacttc------tttcagCTTAAAGAGTACATTGATGACACTGAAGACTTCATCAACATTCAGCTG----------------------------------------------------
upper sequence: Vv09s0018g00570.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G108477_T01 (Zea mays), 3'ss of exon 3
----------gtatcctgcatctttctttacatttgtagacccttgtcttttaatatacttcaggtggggtggagaaaatttattagttagtttcttcatgtcgtttcagCTGAAGGAATACATTGATGACACAGAAGATTTCATTAACATTCAGCTGGTACGTGTTGTTTCTTTCTTATATGTTTGGTTCCCAGAAAGTATTAAGAAAA
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gtaccgagccatatctc-cagcatatcttaaatctggctatgct-atgtgtagtaataatgtgataggagtgaaaggggtctgatgatctgtttttcc---ttctttcagCTTAAAGAGTACATCGATGACACTGAAGACTTCATCAACATTCAGCTG---------------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacttcaggtggggtggagaaaatttattagttagtttcttcatgtcgtttcagCTGAAGGAATACATTGATGACACAGAAGATTTCATTAACATTCAGCTGGTACGTGTTGTTTCTTTCTTATATGTTTGGTTCCCAGAAAGTATTAAGAAAA
tcgtttc CT-rich tract
aaaatttattagttag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcctgcatctttctttacatttgtagacccttgtcttttaatatacttcaggtggggtggagaaaatttattagttagtttcttcatgtcgtttcagCTGAAGGAATACATTGATGACACAGAAGATTTCATTAACATTCAGCTGGTACGTGTTGTTTCTTTCTTATATGTTTGGTTCCCAGAAAGTATTAAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA