Sequence
atgc intronic sequence ATGC exonic sequencegcatgtaatcatgattgtctcgtgttgatcacctttttatttttcattttttttaatcaaacttgggaaagttgacaggatccaattctttcagGTCTCAAACCACTAAAGGTATTTGGTTAGCAAGATGTGCTGACATTGAACCTTGTACTCTTGTAATGGATTTGGAGGGTACTGACGGAAGAGAACGAGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G20610.1 (Glycine max), 3'ss of exon 3
gcatgtaatcatgattgtctcgtgttgatcacctttttatttttcattttttttaatcaaacttgggaaagttgacaggatccaatt-ctttcagGTCTCAAACCACTAAAGGTATTTGGTTAGCAAGATGTGCTGACATTGAACCTTGTACTCTTGTAATGGATTTGGAGGGTACTGACGGAAGAGAACGAGGA
| |||| | ||| | | ||| || | ||| | || || | | | | || || ||||||||||||||| || ||||| || ||| | || |||||||||||||| || |||||||| ||||| ||||||||||||||||| || ||||||||||| |||
gtatgttgttgcaattctgacatgtcacacaa-------------acctttctcaactaactgggtggtgatctgatgtatatgcttgttttcagGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTGCTGACATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGA
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G01230.1 (Glycine max), 3'ss of exon 3
gcatgtaatcatgattgtctcgtgttgatcacctttttatttttcattttttttaatcaaacttgggaaag--ttgacaggatccaattctttcagGTCTCAAACCACTAAAGGTATTTGGTTAGCAAGATGTGCTGACATTGAACCTTGTACTCTTGTAATGGATTTGGAGGGTACTGACGGAAGAGAACGAGGA
| |||| | ||| | | |||| ||| || || ||| | |||| || || | ||| | ||||||||||||||| || ||||| || ||| | || |||||||||| ||| || |||||||| ||||| ||||||||||||||||| || ||||||||||| |||
gtatgttgttgcaattctgacatgtta--cact------------atcccttctaaactaactgggtaatgacctgatgtatatgcttgttttcagGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTGCTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGCGGA
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G42650.1 (Glycine max), 3'ss of exon 4
gcatgtaatcatgattgtctcgtgttgatcacctttttatttttcattttttttaatcaaacttgggaaagttgacaggatccaatt-ctttcagGTCTCAAACCACTAAAGGTATTTGGTTAGCAAGATGTGCTGACATTGAACCTTGTACTCTTGTAATGGATTTGGAGGGTACTGACGGAAGAGAACGAGGA
| || ||| ||||| || ||||||||||||||| || | ||| |||||| | || ||||||| || ||| || |||||||| ||||| |||||||||||||||||||| ||||||||||| |||
-----------------------------------------------------------------gtgaacctgataggatgtgcttgttttcagGTCTCAAACAACCAGAGGAATTTGGATGGCTAGATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACTGATGGAAGAGAACGTGGA
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G02780.1 (Glycine max), 3'ss of exon 3
gcatgtaatcatgattgtctcgtgttgatcacctttttatttttcattttttttaatcaaacttgggaaagttgacaggatccaatt-ctttcagGTCTCAAACCACTAAAGGTATTTGGTTAGCAAGATGTGCTGACATTGAACCTTGTACTCTTGTAATGGATTTGGAGGGTACTGACGGAAGAGAACGAGGA
| | | | ||| || | || || ||| |||| || ||||||||||||||| || | ||| |||||| | || ||||||| || || || |||||||| ||||| |||||||||||||||||||| ||||||||||| |||
------------------------------------gtccaatctggctatcacaattaa-caaggtgaacctgataggacgtgtttgttttcagGTCTCAAACAACCAGAGGAATTTGGATGGCTAGATGTGTTGGGATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACTGATGGAAGAGAACGTGGA
upper sequence: Vv09s0002g02200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G72960.1 (Arabidopsis thaliana), 3'ss of exon 3
gcatgtaatcatgattgtctcgtgttgatcacctttttatttttcattttttttaatcaaacttgggaaagttgacaggatccaattctttcagGTCTCAAACCACTAAAGGTATTTGGTTAGCAAGATGTGCTGACATTGAACCTTGTACTCTTGTAATGGATTTGGAGGGTACTGACGGAAGAGAACGAGGA
|| | || | |||| | ||| |||| | || | | ||| || | | |||| | | | |||||||| ||||| |||||||| ||| | ||||||||||| | || || ||||| || |||||||||||||| ||||| || || || ||||| ||||||
-----------gtatgatttcat-ctgatag--tatttgcttttaacttccgt--gtaaaagtttgttgcctgattaggaactcgtctat--agGTCTCAGACCACAAAAGGTATCTGGCTTGCAAGATGTGCCGGTATAGAGCCTTGCACCCTTGTAATGGATTTAGAGGGCACCGATGGCAGAGAGCGAGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttcattttttttaatcaaacttgggaaagttgacaggatccaattctttcagGTCTCAAACCACTAAAGGTATTTGGTTAGCAAGATGTGCTGACATTGAACCTTGTACTCTTGTAATGGATTTGGAGGGTACTGACGGAAGAGAACGAGGA
ttctttc CT-rich tract
attttttttaatcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcatgtaatcatgattgtctcgtgttgatcacctttttatttttcattttttttaatcaaacttgggaaagttgacaggatccaattctttcagGTCTCAAACCACTAAAGGTATTTGGTTAGCAAGATGTGCTGACATTGAACCTTGTACTCTTGTAATGGATTTGGAGGGTACTGACGGAAGAGAACGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA