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gtggtttttcttgattttgttgaacaacatttactgtcttaatataatgtatatctgaagagtggctggttttggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATGTGATAAATGTTAAACAAATTGCAAAG
species | Vitis vinifera |
transcript | Vv09s0002g00170.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|110381635|gb|EC934981.1|EC934981
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|46917525|gb|CN546854.1|CN546854
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCCAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|351037539|gb|FQ462522.1|FQ462522
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAAGAGGATCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|71858037|gb|DT007092.1|DT007092
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|71863099|gb|DT012154.1|DT012154
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|352798958|gb|FQ480807.1|FQ480807
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|110700764|gb|EE077702.1|EE077702
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|71860941|gb|DT009996.1|DT009996
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|294966728|gb|GW837747.1|GW837747
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|352786546|gb|FQ479753.1|FQ479753
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|110710904|gb|EE087489.1|EE087489
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|351038545|gb|FQ464411.1|FQ464411
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|110424138|gb|EC990494.1|EC990494
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|110718922|gb|EE096307.1|EE096307
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|37183695|gb|CF603049.1|CF603049
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAEST: gi|71858529|gb|DT007584.1|DT007584
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAA
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|294963909|gb|GW836784.1|GW836784
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|161718866|gb|FC067339.1|FC067339
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|110688813|gb|EE067797.1|EE067797
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|71864317|gb|DT013372.1|DT013372
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|71859940|gb|DT008995.1|DT008995
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|351047798|gb|FQ459018.1|FQ459018
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|71861519|gb|DT010574.1|DT010574
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|110727512|gb|EE104359.1|EE104359
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|71861538|gb|DT010593.1|DT010593
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|71863095|gb|DT012150.1|DT012150
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|110686619|gb|EE064467.1|EE064467
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATEST: gi|161715740|gb|FC066144.1|FC066144
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
catttactgtcttaatataatgtatatctgaagagtggctggttttggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATGTGATAAATGTTAAACAAATTGCAAAG
tcttaat putative branch site (score: 3)
ttaatataatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtttttcttgattttgttgaacaacatttactgtcttaatataatgtatatctgaagagtggctggttttggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATATGTGATAAATGTTAAACAAATTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG