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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctttggttttaatgctttgtatatattctgagaatgatcaaggcatgaataaaattgagacttagattttctttcagAGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCATCTTCACGCAAATGGAATAATGCATAGGGATCTTAAACCTGAAAATATC

Basic information

species Vitis vinifera
transcript Vv08s0058g01440.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77583630|gb|DV220845.1|DV220845
EST:     GTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAG                         AGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCA
genomic: GTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAGgtacctttgg ... tttctttcagAGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCA
EST: gi|30252598|gb|CB970149.1|CB970149
EST:     GTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAG                         AGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCA
genomic: GTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAGgtacctttgg ... tttctttcagAGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCA
EST: gi|37184429|gb|CF603783.1|CF603783
EST:     GTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAG                         AGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCA
genomic: GTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAGgtacctttgg ... tttctttcagAGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattctgagaatgatcaaggcatgaataaaattgagacttagattttctttcagAGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCATCTTCACGCAAATGGAATAATGCATAGGGATCTTAAACCTGAAAATATC
                                            ttttctttc  CT-rich tract
                      atgaataaaattga  TA-rich tract