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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcatacatgcttataagaaaaagaagtggacaacgttttataattattttagttgttaggatttcattttcaacctcaaaggattgtatgatcctgaaatttcttgtgcttgtttattgagtcaatctaattctgttaaggttgttttcaaattttagGGTAGTGGTGATGTCAGAAGGGCACCCTCCTGATGTACTGACAAGGATGAACTCAGTATTAAGACGGATTGATTTAACCTGCAAGTTATTTGCTCCTGTA

Basic information

species Vitis vinifera
transcript Vv08s0058g00730.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34547989|gb|CF516221.1|CF516221
EST:     ATCGAAAGAGAGTG                         GGTAGTGGTGATGTCAGAAGGGCACCCTCCTGATGTACTGACAAGGATGAA
genomic: ATCGAAAGAGAGTGgtaatttcat ... caaattttagGGTAGTGGTGATGTCAGAAGGGCACCCTCCTGATGTACTGACAAGGATGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgcttgtttattgagtcaatctaattctgttaaggttgttttcaaattttagGGTAGTGGTGATGTCAGAAGGGCACCCTCCTGATGTACTGACAAGGATGAACTCAGTATTAAGACGGATTGATTTAACCTGCAAGTTATTTGCTCCTGTA
                     atctaat  putative branch site (score: 3)
                                      ttgttttc  putative PPT
                                      ttgttttcaaatttta  TA-rich tract