Sequence
atgc intronic sequence ATGC exonic sequence...tcacttagtaattttaacaagcaacaactgattcttgcccttctatgtgttagcatctgtggagagaacatttaattttaatccactctttttgatgcagTTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTTGGCTGCTGGAATGGGTCTGCCAGATAATGGTCCAAAGCTTATGTCAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g05070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G20550.1 (Glycine max), 3'ss of exon 2
------tcacttagtaattttaacaagcaacaactgattcttgcccttctatgtgttagcatctgtggagagaacatttaattttaat-ccact-ctttttgatgcagTTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTTGGCTGCTGGAATGGGTCTGCCAGATAATGGTCCAAAGCTTATGTCAATT
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gaagaccaaacctataatgccaaca--tcgctcgcacatggcatctttctatatattgga----gtggaatgat--tttgattctgatattacagtttctttgtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATGTAGCTGCTGGGATGGGTATGCCAGACAATGGACCAAAGCTAATGTCTATG
upper sequence: Vv08s0007g05070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA10G06240.1 (Glycine max), 3'ss of exon 2
-----tcacttagtaattttaacaagcaacaactgattcttgcccttctatgtgttagcatctgtggagagaacatttaattttaatccactctttttgatgcagTTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTTGGCTGCTGGAATGGGTCTGCCAGATAATGGTCCAAAGCTTATGTCAATT
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taaacggacttgaatccattccaattgaactacttcaacttggcatctt-tctcacattatatattggagtggaat--gattttggttagtttcttt--gtgcagTATAAAACAAATGATGGGTCCTGCACCACATACTCAACTTGATGCCGATTTAGCTTCTGGGATGGGTATGCCAGACAATGGACCAAAGCTAATGTCTATG
upper sequence: Vv08s0007g05070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G36930.1 (Arabidopsis thaliana), 3'ss of exon 5
-----tcacttagtaattttaacaagcaacaactgattcttgccct--tctatgtgttagcatctgtggagagaacatttaattttaatccactctttttgatgcagTTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTTGGCTGCTGGAATGGGTCTGCCAGATAATGGTCCAAAGCTTATGTCAATT
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tacctctgtatgattatattattgatctatgcatgtctgttgctctgtactcagacttaatatctttctattgtccatttggattt-------ttgtgtgattgcagTGTGAAGAAGATAGAGCGACCAGCGCCACACTCGCAACTCGATGCAGATTTAGCTGGTGGAATGGGAATGCCAGACAATGGTCCAAAGCTGATGTCTGCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|46911131|gb|CN546506.1|CN546506EST: AATGTGGCGGTCAGGGATGAACATTTCAAGACGAAGCGTCACAAGAAGCG TTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTT
genomic: AATGTGGCGGTCAGGGATGAACATTTCAAGACGAAGCGTCACAAGAAGCGgtatgcgctt ... tttgatgcagTTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgttagcatctgtggagagaacatttaattttaatccactctttttgatgcagTTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTTGGCTGCTGGAATGGGTCTGCCAGATAATGGTCCAAAGCTTATGTCAATT
tccactcttttt CT-rich tract
agaacatttaatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcacttagtaattttaacaagcaacaactgattcttgcccttctatgtgttagcatctgtggagagaacatttaattttaatccactctttttgatgcagTTTAAAGCAAATGATGGGGCCTGCACCCCATACCCAACTTGATGCTGACTTGGCTGCTGGAATGGGTCTGCCAGATAATGGTCCAAAGCTTATGTCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - acaagca
- - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - -cccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaac