1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atagctgctttatattgtatagcccttattatcgctccatttattcttttattttgtcctttcgataatctgctgatctctgaccgtctttgatgtgcagATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAAGGATATGGACTTATGAAGCAGAGAAACTGATTTCTATATGCTTATTTAT
species | Vitis vinifera |
transcript | Vv08s0007g04290.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCATTCGGCATTGCTTCAAAACTCTATTGGAAAGCATAAACTCAACTG ATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAAEST: gi|71884355|gb|DT033410.1|DT033410
genomic: CTGCATTCGGCATTGCTTCAAAACTCTATTGGAAAGCATAAACTCAACTGgtacaccatt ... tgatgtgcagATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAA
EST: AAACTCTATTGGAAAGCATAAACTCAATTG ATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAA
genomic: AAACTCTATTGGAAAGCATAAACTCAACTGgtacaccatt ... tgatgtgcagATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAA
cttttattttgtcctttcgataatctgctgatctctgaccgtctttgatgtgcagATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAAGGATATGGACTTATGAAGCAGAGAAACTGATTTCTATATGCTTATTTAT
ccgtcttt CT-rich tract
attttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagctgctttatattgtatagcccttattatcgctccatttattcttttattttgtcctttcgataatctgctgatctctgaccgtctttgatgtgcagATTCAAAAATGAACTTTTGCTCCCTAGCAACAGGTACACCTGAAGAGAGAAGGATATGGACTTATGAAGCAGAGAAACTGATTTCTATATGCTTATTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- agctgct
- - - - - - - - - - - - - - - - cgctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgctg