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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatttttgctccatgtgaattgcttagttttggttttttgttttttggtcttttaaactctgtgcagcatttcatggtgagtgatgggtggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG

Basic information

species Vitis vinifera
transcript Vv07s0104g01480.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G358618_T01 (Zea mays), 3'ss of exon 2
gtaag-----aatttttgctccatgtgaattgcttagttttggt-tttttgttttttggtcttt----taaactctgtgcagcatttcatggtgagtgatgggt--ggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG
|| ||       | |||  | |||    |||   || | |||   | | ||   |||  | |      ||   ||     | | |    |  ||     | |||  || |   | |    |||||||||||||||||||||||||| ||||||||||| |  || ||||| ||||| ||||||||||||||||| || |||
gtgagtttctgttatttctttcatcgatattttatattcttgccatctgtgacctttactatgcaccatacgttcgcactaacgtaagcttctgttcatttggtctgggactgaattcgaagGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG

upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G358618_T02 (Zea mays), 3'ss of exon 2
gtaagaatttttgctccatgtgaattgcttagttttggttttttgttttttggtcttttaaactctgtgcagcatttcatggtgagtgatgggtggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG
 |    |||||   | | ||  |  ||  |    ||   | |      |  | ||     |||  |  ||  |  |||||  |  ||   ||   |||  |       |||||||||||||||||||||||||| ||||||||||| |  || ||||| ||||| ||||||||||||||||| || |||
atcgatattttatattcttgccatctg--tgacctttactatgcaccatacgttcgcactaacg-taagcttctgttcat--ttggtctgggactgaattcga-----agGTGTCATGTGATGGAGGTGGAGTCCTTTGAGAATGAGGAAGTGGCAAAGTTGCTGAATGATTGGTTTGTTAGCATCAAG

upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G39560.1 (Glycine max), 3'ss of exon 3
gtaagaatttttgctccatgtgaattgcttagttttggttttttgttttttggtcttttaaactctgtgcagcatttcatggtgagtgatgggtggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG
                     | |   ||  || |  | ||      |  |  | ||||  |     | || | |||   |   | |     |||      |||| | ||||||||||| |||||||| |||||||| ||| |||||| |||||| || ||||| || |||||||||||||| ||||||
---------------------gtacgtctatgtgtgtgattcacaactcctattgttttggatgagtttcaacgttttcgg---aatctcaagtgt---ttattgctaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTTGTTAGCATTAAG

upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 3
gtaagaatttttgctccatgtgaattgcttagttttggttttttgttttttggtcttttaaactctgtgcagcattt-catggtgagtgatgggtggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG
                  | ||   ||| |  | || |  |      |  |  | ||||  |     | || | ||| |    |      ||  || |     || || ||||||||||| |||||||| |||||||| ||| |||||| |||||| || ||||| || |||||||| ||||| ||||||
-----------------gtatg---tgcattatgtttgactcacaactcgtattgttttggatgagtttcaacgttttcggaatctcaagtgtttgtactttgttcgtaagGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGATGAAGCGGTTGCCAAGTTGCTGAACGATTGGTTCGTTAGCATTAAG

upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ09906 (Selaginella moellendorffii), 3'ss of exon 3
gtaagaatttttgctccatgtgaattgcttagttttggttttttgttttttggtcttttaaactctgtgcagcatttcatggtgagtgatgggtggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG---------------------
                               ||  ||   |   || ||||  || |||   || | | | ||||   | |   | |||  |   |||    ||   |||||||||||| ||||| ||||| || || ||||  |||| ||| || |||||||||||||| |||||||| || || ||                      
-------------------------------gtactgcgctcgagtgtttttctccttt---ctttctccggcat---aagagaactgactg--agaacttcttttgtagGTGTCATGTAATGGAAGTGGAATCGTTCGAGAGCGAAGAGGTCGCCAAATTGCTCAATGACTGGTTTGTGAGCATCAAAGTCGACCGGGAAGAGAGGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaaactctgtgcagcatttcatggtgagtgatgggtggaaaccattggttagGTGTCATGTGATGGAGGTGGAGTCTTTTGAGAATGAAGGGGTTGCAAAATTGCTCAATGATTGGTTTGTTAGTATTAAG
                  atttcat  TA-rich tract