Sequence
atgc intronic sequence ATGC exonic sequence...ataatctcgttcatttatccattattagagatttactttcatgcggttttttaattggatttggtcctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G137944_T01 (Zea mays), 3'ss of exon 3
ataatctcg--ttcatttatccattattag---agatttactttcatgcggttttttaattggatttggt-cctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
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atattcttaatttcttatactcattgttatgtcaggtgtactccaatgagtacttgtgatacctattgctgccctgatttttgtgat------ttttcttatgcagAGATGTGGTTGCTGGCCTTGTGCATCTGCATGACTTGGGAATTATTCATCGTGATTTGAAGCCTCAAAATGTCTTAATAAGCGCAGGAGGACCTATTAGA
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G162167_T02 (Zea mays), 3'ss of exon 1
-ataatctcgttcatttatccattattaga---gatttactttcatgcggttttttaattggatttggtcctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
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gcccatgatattcttatacttattgttatattgggtatactccaatgagtacctgtaatacatattggtgctctgatttttgg----tgaattttcgtatgcagAGATGTGGTTGCTGGCCTTGTGCATTTGCATAACTTGGGAATTATTCATCGTGATTTGAAGCCTCAGAATGTCTTAATAAGCGCAGAAGGACCTATTAGA
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G057885_T01 (Zea mays), 3'ss of exon 1
ataatctcgttcatttatccattattagagatttactttcatgcggttttttaattggatttggtcctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT-------------------------------------------------------------
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------------------------------------------------------------ntcgttctagagattcgttttgtgatttttcttat-gcagagatgtggttgctggccttgtgcataagcaagacttgggaattattcatcgtgatttgaagCCTCAAAACGTCTTAATAAGCGCAGGAGGACCTATTAGAGCAAAGCTTTCTGATATGGGTATCAGTAAGCACCTGCAAGATGACATGACTTCTGTTAGCC
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G09240.1 (Glycine max), 3'ss of exon 4
ataatctcgttcattta---tccattattagagatttactttcatgcggttttttaattggatttggtcctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
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---agctcaaacatgagggttcaattattacattattgttttaacttatttgtttattttctgttgtcagcgtcttgactttcacttttattttgaaacacagGGATGTAGTTTCTGGACTTGTTCATTTGCATGAACTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTTTGATAATAAAAGAAAAATCATTATGT
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G36200.1 (Glycine max), 3'ss of exon 1
ataatctcgttcattta---tccattattagagatttactttcatgcggttttttaattggatttggtcctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
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---agctcaaacatgagggttcaattattacattattgttctaacttatttgtttattttctgttgccattgtcttcactttcacttttattttgaaacacagGGATGTAGTTTCTGGACTTGTTCATTTGCATGAACTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTTTGATATTAAAAGAAAAATCATTATGT
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G21480.1 (Glycine max), 3'ss of exon 4
ataatct-cgttcatttatccattattagagatttactttcatgcggttttttaattggatttggtcctgaattttcttg-atcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
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taaatctatgaaagctcgtacgtgcatggaagttgactttctaa--gtttataatatattttttttaataaattaactttcattgtttgtatggcaacacagGGACATTGTGTCTGGGGTTGTTCATTTGCATGAATTGGGAATGATACATCGGGATTTGAAACCACAAAATGTTCTAATAATCAAGGAAAAATCCTTATGT
upper sequence: Vv07s0031g02180.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G17520.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------------------------------------------------------------------------ataatctcgttcatttatccattattagagatttactttcatgcggttttttaattgg--atttggtcctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
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gttaatttggacttcgtacttttttatatatgtcataatattctttgattaagtgatgttctatttgaacatcaaaggtagctatggttctgataagtctaggctatgtgatacaataaacagtaga-attagttcaaaccttgtttactgatttactgtttaaacttatatttttcagattgtttgtattgtgatgcagGGATATAGTTTGTGGAATCGTCCACTTACACGAATTGGGAATAGTTCATCGGGACTTGAAGCCACAAAATGTGTTAATTAGTAAAGATATGACTTTGAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34547682|gb|CF515914.1|CF515914EST: TTGTGGAAATCAAATGGCTATCCTTCATCTGTATTATTAAGCTTAATGAG GGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCG
genomic: TTGTGGAAATCAAATGGCTATCCTTCATCTGTATTATTAAGCTTAATGAGgttggttcag ... tttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttttaattggatttggtcctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
ttttcttgatcttcta CT-rich tract
atcttctatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ataatctcgttcatttatccattattagagatttactttcatgcggttttttaattggatttggtcctgaattttcttgatcttctattttttgtcacagGGATGTGGTTTCTGGGCTCGTACATTTACATGACTTGGGAATAATTCATCGAGACTTGAAGCCTCAAAATGTGTTGATAATTAAGGAAAAATCTTTATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - -catgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctgaa