Sequence
atgc intronic sequence ATGC exonic sequencegtagattgccagttgttgctgtcatttaattgacaccaccacattctaattttgttggtttgtataatattgatttcattgagtcttgttgtttctaagtgtttctattggattatttgtagGATTTTGAGGCTTTGACACCAAATCTGCTAGCAAGAACAATAGAAACAGTAGAGGGTGGTGGGTTGATTGTGTTGCTGCTCCGTTCTCTATCCTCCCTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G15130.1 (Glycine max), 3'ss of exon 3
gtagattgccagttgttgctgtcatttaattgacaccaccacattctaattttgttggtttgtataatattgatttcattgagtcttgtt----gtttctaagtgtttctattggattatt-tgtagGATTTTGAGGCTTTGACACCAAATCTGCTAGCAAGAACAATAGAAACAGTAGAGGGTGGTGGGTTGATTGTGTTGCTGCTCCGTTCTCTATCCTCCCTCA
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------------------gtatcacacacttc---ctgctagtttcttgtgcagttgtgctttctaggctggcttcctctttcccttttccaagataaatcaattttaccatcatctttccatttagGATTTTGAGGCATTGACACCTAATCTCCTAGCAAGAACAATAGAGACAGTGGAGGGAGGAGGGCTGATTGTTTTGCTGCTTCGGTCTCTATCCTCGCTGA
upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G31850.1 (Glycine max), 3'ss of exon 3
gtagattgccagttgttgctgtcatttaattgacac-caccacattctaattttgttggtttgtataatattgatttcattgagtcttgtt--gtttctaagtgtttctattggattatt-tgtagGATTTTGAGGCTTTGACACCAAATCTGCTAGCAAGAACAATAGAAACAGTAGAGGGTGGTGGGTTGATTGTGTTGCTGCTCCGTTCTCTATCCTCCCTCA
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--------------gtatcaaacacttccttcctgctcaattttttgtgcagttgt-gctttctaggctgtctttctctttcctttttccaagatagatcaatttttccatcatcttccaatttagGATTTTGAGGCGTTGACACCTAATCTCCTAGCAAGAACAATAGAGACAGTGGAGGGAGGAGGGCTGGTTGTTTTGCTGCTTCGTTCTCTATCCTCGCTGA
upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G43960.1 (Glycine max), 3'ss of exon 3
gtagattgccagttgttgctgtcatttaattgacaccaccacattctaattttgttggtttgtataatattgatttcattgagtcttgttgtttctaagtgtttctattggattatttgtagGATTTTGAGGCTTTGACACCAAATCTGCTAGCAAGAACAATAGAAACAGTAGAGGGTGGTGGGTTGATTGTGTTGCTGCTCCGTTCTCTATCCTCCCTCA
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------------------------------gtatatatctttatcctt-ttctacttgtttttttctttccttttttcccaagataaaccagttttgctattctctcttcttttatt---agGATTTTGAGACATTGACACCTAATCTCCTAGCAAGAACCATAGAGACAGTGGAGGGAGGAGGGTTGATTGTTCTGCTGCTTGGTTCTCTATCTTCCCTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattgatttcattgagtcttgttgtttctaagtgtttctattggattatttgtagGATTTTGAGGCTTTGACACCAAATCTGCTAGCAAGAACAATAGAAACAGTAGAGGGTGGTGGGTTGATTGTGTTGCTGCTCCGTTCTCTATCCTCCCTCA
tattgat putative branch site (score: 3)
attatttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagattgccagttgttgctgtcatttaattgacaccaccacattctaattttgttggtttgtataatattgatttcattgagtcttgttgtttctaagtgtttctattggattatttgtagGATTTTGAGGCTTTGACACCAAATCTGCTAGCAAGAACAATAGAAACAGTAGAGGGTGGTGGGTTGATTGTGTTGCTGCTCCGTTCTCTATCCTCCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT