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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttgaactatttttacttcttgtaagtcatgtatttccagttggcctaatgttttcttctacaattttctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAATTTTGGCACGCAGAATGATTCTTCTTTTCCCCAGATTTTTTTTTGGGGCC

Basic information

species Vitis vinifera
transcript Vv07s0031g00030.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110687065|gb|EE064148.1|EE064148
EST:     AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG                         CTGGAGCTTTCTAAAGACGTGGTGGTAGCA
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCA
EST: gi|110684805|gb|EE062504.1|EE062504
EST:     AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG                         CTGGAGCTTTCTAAGGACGTGGTGGTAGNCAAAA-TTACCTCAAGAACTAA
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAG-CAAAAATTACCTCAAGAACTAA
EST: gi|30304103|gb|CB980897.1|CB980897
EST:     AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG                         CTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
EST: gi|110374573|gb|EC939425.1|EC939425
EST:     AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG                         CTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
EST: gi|110726472|gb|EE102283.1|EE102283
EST:     AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAG                         CTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT
genomic: AGGACTTCATCAACTGAAGACATGAGCCTTCCTCATGATTAAAGCTTGAGgtagtttgaa ... ctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtcatgtatttccagttggcctaatgttttcttctacaattttctattaacagCTGGAGCTTTCTAAGGACGTGGTGGTAGCAAAAATTACCTCAAGAACTAATTTTGGCACGCAGAATGATTCTTCTTTTCCCCAGATTTTTTTTTGGGGCC
                    gcctaat  putative branch site (score: 3)
                                         ttttctatt  putative PPT
                                    tacaattttctattaa  TA-rich tract