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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattggttatccctgtactcctttatctgtgtcctatactatttgaaccaggttttgattaaagactaaacattcaagctgtcgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATTAAGGCGAGCTATTGAGGCACTACTGACTGGCATGGGTGCACCCTTTCGG

Basic information

species Vitis vinifera
transcript Vv07s0005g01660.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g01660.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G51190.1 (Glycine max), 3'ss of exon 3
gtaatattggttatccctgtactcctttatctgtgtcctatactatttgaaccaggttttgattaaagactaaacattcaagct--gtcgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATTAAGGCGAGCTATTGAGGCACTACTGACTGGCATGGGTGCACCCTTTCGG
        | ||    || | |  || | || |  |  | |  |  || ||   | ||   | | | || ||||  ||  | |     | ||   ||||||||| |||||||||||||| || |||||||| |||||  ||||| | |||||    ||  | |||||||| || | |||||| ||||||||||||| |
--------gtttgcatctttccctctct-tcagattattgttatcctt-aattggatt---aatgaggattaaagttttgatcataacctttttgcagTATATTAACTGGATGGGGCAAGCATAGCAAAGTAGTTGGCAATGGCACTTTAAGAAAGGCAGTAGAGGCACTCCTAAATGGCATTGGTGCACCCTTTCAG

upper sequence: Vv07s0005g01660.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G31400.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaatattggttat-ccctgtactcctttatctgtgtcctatactatttgaaccaggtt--ttgattaaagactaaacattcaagctgtc--gttg-aacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATTAAGGCGAGCTATTGAGGCACTACTGACTGGCATGGGTGCACCCTTTCGG
 | || | ||| ||     | |   ||||     |  |||  ||| ||   || |  |   ||  || || |||    | | |   | ||   |||   ||||||||||||||| ||||| |||||||||||||||||||| || || ||| |||| |||||  |||| |  ||  |||  || |||| |||||| || |  
-tgatgt-ggtcatgtttcgcaaatcttttgtgatcccctcaacttttatcactatctgggttagttcaaaacttgttaataactttttcttattgtggcagTATATTGACTGGCTGGGGGAAACACAGCAAAGTGGTTGGAGACGGAGCACTAAGACGAGCGGTTGAAGTTCTTTTGAGGGGAATGGATGCACCATTCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110365477|gb|EC928530.1|EC928530
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|18458176|gb|BM436454.1|BM436454
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCA
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCA
EST: gi|30320321|gb|CD003583.1|CD003583
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|110686743|gb|EE064727.1|EE064727
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|110703518|gb|EE080432.1|EE080432
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|110700546|gb|EE078710.1|EE078710
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|34416633|gb|CF415387.1|CF415387
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|110727577|gb|EE104496.1|EE104496
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|110386922|gb|EC951557.1|EC951557
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|30125956|gb|CB911295.1|CB911295
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
EST: gi|77585024|gb|DV221596.1|DV221596
EST:     AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAG                         TATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT
genomic: AATATTCGGTCTATTGTTTTTGAGGGTCATGAGCTGCCACAGCTCTTAAGgtaatattgg ... cgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatttgaaccaggttttgattaaagactaaacattcaagctgtcgttgaacagTATATTGACTGGATGGGGCAAACACAGCAAAGTGGTTGGGGATGGCGCATTAAGGCGAGCTATTGAGGCACTACTGACTGGCATGGGTGCACCCTTTCGG
                          gactaaa  putative branch site (score: 2)
               ttttgattaaa  TA-rich tract