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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgaataacttctgaaagttcaaagttattgttttgacatatacttgaatgaattgtggattaaatatggcattttatcatcaattccattggatcagaagaagagtgtgattcaactggtcaataagttcaacaatgtaagtagaaattgagatgatttttctcccctttttttttttcctgtgtgcagGGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATTATTTCTCTGGAGTCATCATGCATTATGCATTTCACCCATGTTGATGATA

Basic information

species Vitis vinifera
transcript Vv07s0005g00160.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os11g43610.1 (Oryza sativa), 3'ss of exon 3
gtgcgaataacttctgaaagttcaaagttattgttttgacatatacttgaatgaattgtggattaaatatggcattttatcatcaattccattggatcagaagaagagtgtgattcaactggtcaataagt-tcaacaatgtaagtagaaattgagatgatttttctccccttt------ttttttttcctgtg-tgcagGGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATTATTTCTCTGGAGTCATCATGCATTATGCATTTCACCCATGTTGATGATA
                                                                                                    || || |  || | ||   |    ||  | | | ||| |  |||  |||        |  |  |||  || ||       |  ||  || ||   |  |||| |||||| | ||||||||||| ||||||||||| |||||||| || ||  | || || |||||| ||||| | ||||| ||||  |  |  ||  |  
----------------------------------------------------------------------------------------------------aacaacatagtaactcgtatcacaaaccaatatgaactaaataaacagatgccttctttttcattcctccattaacgtgataattcgtcttgcaatctagGGCATCTGTGCTCATGTTGATCTGATGCGCTTTGATGATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCACTTCAGTCGGGCAGAACAAG

upper sequence: Vv07s0005g00160.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G02485.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgcgaataacttctgaaagttcaaagttattgttttgacatatacttgaatgaattgtggattaaatatggcattttatcatcaattccattggatcagaagaagagtgtgattcaactggtcaataagttcaacaatgtaagtagaaattgagatgatttttctcccctttttttttttcctgtgtgcagGGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATTATTTCTCTGGAGTCATCATGCATTATGCATTTCACCCATGTTGATGATA
                                                                                       |  |   ||  | |  | | |||  |     | | ||| ||   |||   ||  |   |||  ||      | |||||    |  |    |    || |   ||||| || ||| |||||||||||||  |||| ||||||||||| ||||||||  | |||||||||||| | ||| | ||||  ||||  |  |  ||  | |
-------------------------------------------------------------------------------------ggtttaagagagtacacaatgggtgaaa----gcagatcattag--tcacggata-attcagactttagatcaagttttcatgacaatgccatggatctttcaacagGGAATTTGTGCACATGTTGATCTGCTGCGTTTTGAAGATGGGATTGCCATCGTCTCTCTGGAGTCACCTTGCGTGATGCGGTTCAGTCCCGCAGAAAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543989|gb|CF512221.1|CF512221
EST:     GAGAGCCCCTTTTTGATCAACTAATCTTAAATGTATACCAACCAGGTGAG                         GGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATT
genomic: GAGAGCCCCTTTTTGATCAACTAATCTTAAATGTATACCAACCAGGTGAGgtgcgaataa ... ctgtgtgcagGGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATT
EST: gi|161712164|gb|FC061536.1|FC061536
EST:     GAGAGCCCCTTTTTGATCAACTAATCTTAAATGTATACCAACCAGGTGAG                         GGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATT
genomic: GAGAGCCCCTTTTTGATCAACTAATCTTAAATGTATACCAACCAGGTGAGgtgcgaataa ... ctgtgtgcagGGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATT
EST: gi|34544078|gb|CF512310.1|CF512310
EST:     GAGAGCCCCTTTTTGATCAACTAATCTTAAATGTATACCAACCAGGTGAG                         GGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATT
genomic: GAGAGCCCCTTTTTGATCAACTAATCTTAAATGTATACCAACCAGGTGAGgtgcgaataa ... ctgtgtgcagGGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATT
EST: gi|71871742|gb|DT020797.1|DT020797
EST:     GAGAGCCCCTTTTTGATCAACTAATCTTAAATGTATACCAACCAGG-G--                         --TATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATT
genomic: GAGAGCCCCTTTTTGATCAACTAATCTTAAATGTATACCAACCAGGTGAGgtgcgaataa ... ctgtgtgcagGGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaagtagaaattgagatgatttttctcccctttttttttttcctgtgtgcagGGTATCTGTCCACATGTTGATCTTATGCGCTTTGAAGATGGAATTGCCATTATTTCTCTGGAGTCATCATGCATTATGCATTTCACCCATGTTGATGATA
                   tgatttttctcccctt  CT-rich tract
                                 tttttttttttcct  TA-rich tract