1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccttgcccctaatttttttcacaataagaacatctgaatgcatgttggctattttgtaggtctggtatgatattgtggtttttatttgtttttatttcagGTTAAGTCACAAAAGAATCTGAAGAGGACAGAATCTAAGAAATCACATTCCTGGTGGTGGGATAGTCATATCAGTCCCAAAAACTCCAAGTGGCTCGCTG
species | Vitis vinifera |
transcript | Vv06s0004g08170.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tggctattttgtaggtctggtatgatattgtggtttttatttgtttttatttcagGTTAAGTCACAAAAGAATCTGAAGAGGACAGAATCTAAGAAATCACATTCCTGGTGGTGGGATAGTCATATCAGTCCCAAAAACTCCAAGTGGCTCGCTG
tttttatttgttttt CT-rich tract
atattgtggtttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgcccctaatttttttcacaataagaacatctgaatgcatgttggctattttgtaggtctggtatgatattgtggtttttatttgtttttatttcagGTTAAGTCACAAAAGAATCTGAAGAGGACAGAATCTAAGAAATCACATTCCTGGTGGTGGGATAGTCATATCAGTCCCAAAAACTCCAAGTGGCTCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - -cccctaa
- - - - - - - - - - - -ataagaa
- - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtctgg