1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacctatctacctacctacattcattcattcattctctttttctagctgctatctccctccctcattaactttatgttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCCTTTCTTCACCCAGAGCTGGAGTGGGACTTCCGCTTGCCACTTGTGAAA
species | Vitis vinifera |
transcript | Vv04s0079g00600.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAGAACAAGGAACCGGG ATGGGGTACTCCAATCCATGTEST: gi|46917851|gb|CN547180.1|CN547180
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGT
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|352764779|gb|FQ471839.1|FQ471839
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAAG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|30125561|gb|CB910900.1|CB910900
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|26262418|gb|CA813481.1|CA813481
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|34548841|gb|CF517073.1|CF517073
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|29785100|gb|CB341828.2|CB341828
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: TCTTTTGACAAAG-AAGATAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|30324791|gb|CD008053.1|CD008053
genomic: TCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|30129897|gb|CB915236.1|CB915236
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGNGATACTCCAATCCATGTAGATGCAGCAAGTEST: gi|34545806|gb|CF514038.1|CF514038
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGT
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|110688418|gb|EE066946.1|EE066946
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCCTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCEST: gi|110720857|gb|EE097156.1|EE097156
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|110697963|gb|EE075429.1|EE075429
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|32270055|gb|CD719214.1|CD719214
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCEST: gi|110712431|gb|EE090048.1|EE090048
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
EST: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGG ATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
genomic: GATGTTAAACACTTGAATGATCTTTTGACAAAGAAAAACAAAGAAACAGGgtacctatct ... gttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACC
cattctctttttctagctgctatctccctccctcattaactttatgttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCCTTTCTTCACCCAGAGCTGGAGTGGGACTTCCGCTTGCCACTTGTGAAA
cattaac putative branch site (score: 2)
attaactttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctatctacctacctacattcattcattcattctctttttctagctgctatctccctccctcattaactttatgttttggtagATGGGATACTCCAATCCATGTAGATGCAGCAAGTGGTGGCTTTATTGCACCCTTTCTTCACCCAGAGCTGGAGTGGGACTTCCGCTTGCCACTTGTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA