1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttgacttttcttagccatccagagtgcataaaaagatttcatgatacatttacttgtgtaataataactatatctttttttccggtggtttggcactagGTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCAATTGCTGGTGGGAGTGAAGTTAGTGATGATGCTGCTAGTTGGGAAACTG
species | Vitis vinifera |
transcript | Vv03s0038g02570.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAAAAATGGCGATATTGAAGTTACATGGGCTGATGGGATGGTTTCAACG GTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCAEST: gi|34544592|gb|CF512824.1|CF512824
genomic: TTAAAAATGGCGATATTGAAGTTACATGGGCTGATGGGATGGTTTCAACGgtatattcat ... ttggcactagGTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCA
EST: TTAAAAATGGCGATATTGAAGTTACATGGGCTGATGGGATGGTTTCAACG GTCGGACCTCGAGCNGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCAEST: gi|110392926|gb|EC957567.1|EC957567
genomic: TTAAAAATGGCGATATTGAAGTTACATGGGCTGATGGGATGGTTTCAACGgtatattcat ... ttggcactagGTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCA
EST: TTAAAAATGGCGATATTGAAGTTACATGGGCTGATGGGATGGTTTCAACG GTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCA
genomic: TTAAAAATGGCGATATTGAAGTTACATGGGCTGATGGGATGGTTTCAACGgtatattcat ... ttggcactagGTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCA
tacatttacttgtgtaataataactatatctttttttccggtggtttggcactagGTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCAATTGCTGGTGGGAGTGAAGTTAGTGATGATGCTGCTAGTTGGGAAACTG
taataac putative branch site (score: 1)
ttgtgtaataataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgacttttcttagccatccagagtgcataaaaagatttcatgatacatttacttgtgtaataataactatatctttttttccggtggtttggcactagGTCGGACCTCAAGCAGTTTATGTTGTTGGTCGAGATGATGATGATGAGTCAATTGCTGGTGGGAGTGAAGTTAGTGATGATGCTGCTAGTTGGGAAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - -ccatcca
- - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - -tttcatg
- - - - - - - - - - - - - - - - - - - - - - - -catttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataataa