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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatgcaggtgcttcaaaggtcttgtttgtgctaaattattaaaataaaagtggaattttctttttctcttttattttagaactaacatgtttgatatatgtgaatagTGCCATTTTGGCGCATTTCATGTTGAAGGAACGGCTACAGAAAATGGGTGTTCTGGGATGTGTTTCATGCATTGTGGGATCAGTAGTGATTGTAATCCAT

Basic information

species Vitis vinifera
transcript Vv03s0038g01940.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G03390.1 (Glycine max), 3'ss of exon 3
gtaataatgcaggtgcttcaaaggtcttgtttgtgctaaattattaaaataaaagtggaattttctttttctcttttattttagaactaacatgtttgatatatgtgaatagTGCCATTTTGGCGCATTTCATGTTGAAGGAACGGCTACAGAAAATGGGTGTTCTGGGATGTGTTTCATGCATTGTGGGATCAGTAGTGATTGTAATCCAT
                        ||| | ||    |||| | || |       |  ||||||| | ||| | |   ||| |||||||||||| |  | ||| |||   ||||||  ||||| | || ||| |||||||||||||||| | ||| ||||| ||  |||| ||||| || ||||||||||||||| | || ||||| ||||||
--------------------gtactctagctttaattaaaattttgattgttttgatgaattttgtgtttgtgtgg-attgtagaactaacatatccggtatgtgttgctagTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGTATTGGGGTGTGTATCCTGCATTGTGGGATCAATTGTTATTGTCATCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattttctttttctcttttattttagaactaacatgtttgatatatgtgaatagTGCCATTTTGGCGCATTTCATGTTGAAGGAACGGCTACAGAAAATGGGTGTTCTGGGATGTGTTTCATGCATTGTGGGATCAGTAGTGATTGTAATCCAT
     ttctttttctctttta  TA-rich tract