Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctatctttgtgtggcattaattttgtgaggtctcagccaaaggatgtgagtccttttatgtctctgtcatttttaagtatgtgattgaattcttgctgactattgagggacacgtcttttaacatctctttcacaatattgagattaaattgatttttcgttgggctgtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGATGCATATAGGGTAGACAACTTGGATAGGCAGGTTGTCAAAGCTATAACT

Basic information

species Vitis vinifera
transcript Vv02s0109g00360.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0109g00360.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G00600.1 (Glycine max), 3'ss of exon 4
gtttgttctatctttgtgtggcattaattttgtgaggtctcagccaaaggatgtgagtccttttatgtctctgtc-atttttaagtatgtgattgaattcttgctgactattgagggacacgtcttttaacatctctttcacaatattgagattaaattgatttttcgttgggctgtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGATGCATATAGGGTAGACAACTTGGATAGGCAGGTTGTCAAAGCTATAACT
               ||      ||||||   | | || | |     |  |  | |  ||| | | |  | | |    | ||||  | |||||| | |   |     || |  |   || | | ||||    || | ||     | ||| |        || | |  |||    ||| |||  || || ||||| ||||||||||||||||| || || |||||||| || || ||||  ||||| || ||||||||||||| |   || | |||||||||||| 
---------------gtacatgcttaattgctt-atgtttaacatgtaacacttca--cctgtaaagcatgtatttggtcttaaaaaagtgatttactgtgtctgtcctttctacttacccctttttt----tcccctt----gttttgtgg-------gaatctgtgtt----tgtttgagtagTTTCCTTCTGAACAAGACCATAGATGTACTGCTTTATGTGGATCGCTTGGATGTGTATAGAGTGGACAACTTGGATAAGGTAGTCGCCAAAGCTATAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351032042|gb|FQ460299.1|FQ460299
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351030649|gb|FQ438487.1|FQ438487
EST:     CTTGTAGAAAGGGGATATGTCAATGATCAGGCACTTGAAATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|32247861|gb|CD713680.1|CD713680
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351025046|gb|FQ433463.1|FQ433463
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|71876475|gb|DT025530.1|DT025530
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351049167|gb|FQ449889.1|FQ449889
EST:     CTTGTAGAAGGGGGATATGTTAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|33401498|gb|CF207125.1|CF207125
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|352789810|gb|FQ478625.1|FQ478625
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|71875744|gb|DT024799.1|DT024799
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|349822372|gb|FQ412636.1|FQ412636
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351030119|gb|FQ430861.1|FQ430861
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCGTAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCCACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|352798838|gb|FQ478473.1|FQ478473
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351045998|gb|FQ441381.1|FQ441381
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351027316|gb|FQ444565.1|FQ444565
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|352798554|gb|FQ480579.1|FQ480579
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|32247300|gb|CD713119.1|CD713119
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351032119|gb|FQ460376.1|FQ460376
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|352786750|gb|FQ481125.1|FQ481125
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351012367|gb|FQ430052.1|FQ430052
EST:     CTTGTAGAAGGGGGATATGTTAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|161710146|gb|FC061044.1|FC061044
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351052014|gb|FQ455307.1|FQ455307
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|32270337|gb|CD719496.1|CD719496
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|110694471|gb|EE071604.1|EE071604
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351035432|gb|FQ459699.1|FQ459699
EST:     CCTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|33405748|gb|CF211375.1|CF211375
EST:     CAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351038581|gb|FQ464447.1|FQ464447
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|351015670|gb|FQ427155.1|FQ427155
EST:     CTTGTAGAAGGGGGATATGTTAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
EST: gi|32268282|gb|CD717441.1|CD717441
EST:     CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACG                         ATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA
genomic: CTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGgtttgttcta ... gtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctctttcacaatattgagattaaattgatttttcgttgggctgtctgaacagATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGATGCATATAGGGTAGACAACTTGGATAGGCAGGTTGTCAAAGCTATAACT
                         aattgat  putative branch site (score: 4)
            aatattgagattaaat  TA-rich tract