1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttagtggatgtttaaaacctagtacttcagcttgcatgagctgcatttttcttatatatgacaaacataaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTG
species | Vitis vinifera |
transcript | Vv02s0025g00070.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGAT GTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTEST: gi|349826284|gb|FQ416089.1|FQ416089
genomic: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagt ... tgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
EST: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGAT GTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTEST: gi|71875288|gb|DT024343.1|DT024343
genomic: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagt ... tgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
EST: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGAT GTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
genomic: CCATCTATTGGTTTTGTCAACAAGATCTACCACCCAAATGTTGATGAGATgtgagttagt ... tgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTT
taaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTG
tcttt CT-rich tract
tcaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttagtggatgtttaaaacctagtacttcagcttgcatgagctgcatttttcttatatatgacaaacataaggaagaattggttttctcaaatatgacaatcttgtgggtctttgagtttcagGTCTGGTTCAGTTTGTTTAGATGTCATCAATCAGACTTGGAGCCCAATGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG