Sequence
atgc intronic sequence ATGC exonic sequencegttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA09G34170.1 (Glycine max), 3'ss of exon 3
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
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gtttttattggaacagtctttt-gctggcattaatggcttatcgtt-----ttcattattgtc----aagattggattttggttcatccagctcccttatttttta-----gGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G01740.1 (Glycine max), 3'ss of exon 2
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
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--gtttttattgaaacagtctttgttggcattaatggcttatcattttcg-----ttattgtc----aagattggattttggttcacccagctccctt-atttt----gtagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G34280.1 (Glycine max), 3'ss of exon 3
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttat--tacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
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-----------------------gtttttaatgaaaaagtctta-----gttagcatattgtgtttttgttgtacagcttggat--tttgatcctcaattccttcattgtacagACATATTCTCCTATACCTCCACACGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGCGTCCAG
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G15810.1 (Glycine max), 3'ss of exon 3
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttt---tttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
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-----------------------gtttttaatgaaaaagtctta-----gttggcatattgtgtttttattgttgtcaagcttggattttgatcctcaattccttcattttacagACGTATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAG
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G35530.1 (Arabidopsis thaliana), 3'ss of exon 3
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacagGCATATTCTCCCATACCTCCAC---ATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
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-----------------------gttaggac--agattcctccatctatggatctgcgctctctttt-----cttgttgcatttgatctttacggctttcttttcg--acagGCATATTCTCCTATGCCGCCGCCTCATGGTTATGTGGCATCTAGTCCCCAACCTCACCCTTATATGTGGGGAGTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699224|gb|EE076034.1|EE076034EST: CTTCAACCACGAGCGCTGGAACAGTTAATCCTGATTGGTCTGGATTTCAG GCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCT
genomic: CTTCAACCACGAGCGCTGGAACAGTTAATCCTGATTGGTCTGGATTTCAGgttcctttag ... tttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtcttttaattgtttatgtggcttgacttaattttttttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
ttttttttatttttat CT-rich tract
ttgacttaattttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacagGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA