1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgctttcctatggttaatagtattgcctccaatgctctatgcaatcttttagaaatctctttttcctgcaaagaaggatttggaatcaaggatgtgtttttcttaatagtagtagcatggtttagttcagctatgccttatcatgcggaaatactaattacttatattgggaaacgtttctcttcattagACTGGAGATGAGAAGATTCAAGGACTCTATCTTATGAAGCTTGTGAGATCATTCTGTACATCCTCTACTGAAACAACTG
species | Vitis vinifera |
transcript | Vv01s0026g02280.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCTAGTTAATCTCACCCAGTCTGATGATGGTATTGCATCCTTGCTTCAG ACTGGAGATGAGAAGATTCAAGGACTCTATCTTATGAAGCTTGTGAGATCAEST: gi|110363261|gb|EC926837.1|EC926837
genomic: TCCTAGTTAATCTCACCCAGTCTGATGATGGTATTGCATCCTTGCTTCAGgtgctttcct ... tcttcattagACTGGAGATGAGAAGATTCAAGGACTCTATCTTATGAAGCTTGTGAGATCA
EST: CACCCAGTCTGATGATGGTATTGCATCCTTGCTTCAG ACTGGAGATGAGAAGATTCAAGGACTCTATCTTATGAAGCTTGTGAGATCA
genomic: CACCCAGTCTGATGATGGTATTGCATCCTTGCTTCAGgtgctttcct ... tcttcattagACTGGAGATGAGAAGATTCAAGGACTCTATCTTATGAAGCTTGTGAGATCA
ccttatcatgcggaaatactaattacttatattgggaaacgtttctcttcattagACTGGAGATGAGAAGATTCAAGGACTCTATCTTATGAAGCTTGTGAGATCATTCTGTACATCCTCTACTGAAACAACTG
tactaat putative branch site (score: 1)
cgtttctcttcatt putative PPT
aaatactaattactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctttcctatggttaatagtattgcctccaatgctctatgcaatcttttagaaatctctttttcctgcaaagaaggatttggaatcaaggatgtgtttttcttaatagtagtagcatggtttagttcagctatgccttatcatgcggaaatactaattacttatattgggaaacgtttctcttcattagACTGGAGATGAGAAGATTCAAGGACTCTATCTTATGAAGCTTGTGAGATCATTCTGTACATCCTCTACTGAAACAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA