1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcaagactacagaaaatgtgtatttgcttgcactgtggcttttatgatttatgtaaataataaacatcaaatgattcattctaatgttttcttattgcagATTTTAAGCAAGTTGTCAGCCCCATCTCCGTTGCTCACTTCTCACAGTACAAACTTACCGCATTACTTCTTAAGCAGCTGGAAAATCTCAGTTTCCGTGT
species | Vitis vinifera |
transcript | Vv01s0010g02570.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gatttatgtaaataataaacatcaaatgattcattctaatgttttcttattgcagATTTTAAGCAAGTTGTCAGCCCCATCTCCGTTGCTCACTTCTCACAGTACAAACTTACCGCATTACTTCTTAAGCAGCTGGAAAATCTCAGTTTCCGTGT
ttctaat putative branch site (score: 2)
ttttcttatt CT-rich tract
taaataataaacatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagactacagaaaatgtgtatttgcttgcactgtggcttttatgatttatgtaaataataaacatcaaatgattcattctaatgttttcttattgcagATTTTAAGCAAGTTGTCAGCCCCATCTCCGTTGCTCACTTCTCACAGTACAAACTTACCGCATTACTTCTTAAGCAGCTGGAAAATCTCAGTTTCCGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - agaaaat
- - - - - - - - - - - - - cttgcac
- - - - - - - - - - - - - - - - - -tggcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaat