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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttacccaattttaagatataaattcatagttgaaataaatgtctgcgtatgcatgtaaattcatcaatagcatctgagcacagtgaaactgcagGTGGTGTAAGGACTGGGGCCTCGCTGACATGGGATTTGGTCGAGAGAAGACCACGTATTGTTACTTTGCAGTGGCCGCTAGTAGTTCCCTCCCTCATGAC

Basic information

species Vitis vinifera
transcript Vv00s0692g00020.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0692g00020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G25270.1 (Glycine max), 3'ss of exon 9
gtcttaccca---attttaagatataaatt-----catagttgaaataaatgtctgcgtatgcatgta--aattca----tcaatagcatctgagc-acagtgaa-actgcagGTGGTGTAAGGACTGGGGCCTCGCTGACATGGGATTTGGTCGAGAGAAGACCACGTATTGTTACTTTGCAGTGGCCGCTAGTAGTTCCCTCCCTCATGAC
|||| |   |   ||||||  || |   |      | || || | |  ||  |  ||||| || |||   || |||    |||  |  |  | ||  ||  | |      |||||||    |  | || || ||  |  | |||||||||||  ||||||||||||| |||||||||| |||  | || |||   | | ||   ||  |||||
gtctgatttattaattttagaatttttttggtgaacgtatttaagaataacata-gcgta-gcttgttataactcatgtctcatcacaaattaagttacgatcattgtaacagGTGGGCCCAAAATTGCGGTCTAACGAATATGGGATTTGGAAGAGAGAAGACCACATATTGTTACTATGCTATAGCTGCTGCCACTACCTATCCAAATGAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctgcgtatgcatgtaaattcatcaatagcatctgagcacagtgaaactgcagGTGGTGTAAGGACTGGGGCCTCGCTGACATGGGATTTGGTCGAGAGAAGACCACGTATTGTTACTTTGCAGTGGCCGCTAGTAGTTCCCTCCCTCATGAC
                taaattcatcaata  TA-rich tract