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gtgcaactattgcaatttatatttcttgtaaattttggatttttagtgacaaaaacatttctagcatcattgtacatgtgattacaatgcaagtattcttccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTATTTGATACAAGCTGCAGTAGAGACTTGTCGCTTATTGAATCTTGTAATG
species | Vitis vinifera |
transcript | Vv00s0508g00020.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAG GTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTAEST: gi|110699299|gb|EE076186.1|EE076186
genomic: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactat ... ccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
EST: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAG GTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTAEST: gi|56409134|gb|CX017386.1|CX017386
genomic: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactat ... ccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
EST: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAG GTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTAEST: gi|56409463|gb|CX017715.1|CX017715
genomic: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactat ... ccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
EST: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAG GTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
genomic: CCCAGTCAAGGGCTTCCTTTGCTATTCATTTTGGCCTCTCTCCACTCCAGgtgcaactat ... ccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTA
catttctagcatcattgtacatgtgattacaatgcaagtattcttccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTATTTGATACAAGCTGCAGTAGAGACTTGTCGCTTATTGAATCTTGTAATG
tattcttcc CT-rich tract
attacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcaactattgcaatttatatttcttgtaaattttggatttttagtgacaaaaacatttctagcatcattgtacatgtgattacaatgcaagtattcttccaatttcagGTTTTGAGGAAGCTCACAACATTTTTTAAGTCCTTGGGGGTCAAAGCTGTATTTGATACAAGCTGCAGTAGAGACTTGTCGCTTATTGAATCTTGTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG