Sequence
atgc intronic sequence ATGC exonic sequence...agtttgatatctcaaactttcaagaatttggtatactatttgtgttctggtcaaaattagtacagcaatgaattctaatgtaatgaacatgattgtatagGTGACCGCAAGGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G29620.1 (Glycine max), 3'ss of exon 2
agtttgatatctcaaactttcaagaatttggtatact-atttg-tgttctggtcaaaattagtacagcaatgaattctaatgtaatgaacatgattgtatagGTGACCGCAAGGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACA
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-ctatcatg-cacaacccagtgataagctagtatttagatttgatatgccaagtgcaaaaatgatattatttaattttaaatataaaattgtggttttatagGTGATCGCAAGGACCAGAAAATTCTTGAAAGTCTTAGAGCTGAAAGGAAGGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACA
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G17080.1 (Glycine max), 3'ss of exon 2
--agtttgatatctca--aactttcaagaatttggtatactatttgtgttctggtcaaaattagtacagcaatgaattctaatgtaatgaacatgattgtatagGTGACCGCAAGGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACA
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atcattcacaaccccagtgataagctagaatttagagtttgat--atatcgagtacaaaattaatat--tatttaattttaaatataaaattgtggttttatagGTGATCGCAGGGACCAGAAAATTCTTGAAAGTCTTAGAGCTGAAAGGAAGGCAAAAATTGATGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACA
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA04G07860.1 (Glycine max), 3'ss of exon 3
---agtttgatatctcaaactttcaagaatttggtatactatttgtgttctggtcaaaattag--tacagcaatgaattc-taatgtaatgaacatgattgtatagGTGACCGCAAGGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACA
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tttggacaggcaactagtgctt---agagttttataatttatatgc---caagtgaaaataaaattccctttttgaatttataatttataatttgtgattttatagGTGATTGCAGGGATCAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACA
upper sequence: Vv00s0215g00090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G07930.1 (Glycine max), 3'ss of exon 3
agtttgatatctcaaactttcaagaatttggtatactatt-tgtgttctggtcaaaattagtacagcaatgaattctaatgtaatgaa--catgattgtatagGTGACCGCAAGGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACA
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atgcacaccttttggaccggcaactagtgcttagagttttataatttatatgccaagtgaaaataaaatt---cccttactttttgaatttgtgattttatagGTGATCGCAGGGATAAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctggtcaaaattagtacagcaatgaattctaatgtaatgaacatgattgtatagGTGACCGCAAGGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACA
ttctaat putative branch site (score: 2)
aattctaatgtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtttgatatctcaaactttcaagaatttggtatactatttgtgttctggtcaaaattagtacagcaatgaattctaatgtaatgaacatgattgtatagGTGACCGCAAGGACCAGAAAACTCTGGAAAGGCTTCGGGCTGAAAGGCAAGCAAAGATTGATGAGCTTAAGGAAAAGACAAATTACTATATTACTCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - ctcaaac
- - - - - - - - - -tcaagaa
- - - - - - - - - - - - - - - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaac