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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttacattctcctttcaaagTTTTGGGATCACGAGCTTGCTTGCATGGCGAGCATGTGTACCGTTTGATACTGACCAGAGTTTTTATCTTTTTACATGGTCGGAAAAATGCAGAATTAAA

Basic information

species Vitis vinifera
transcript Vv07s0005g01650.t01
intron # 27
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362242|gb|EC925762.1|EC925762
EST:     GGAAACCCATGTTGAGAAAGAAGACTTACTAAAAGCTAGAGTGATAGAAA                         G
genomic: GGAAACCGATTTTAAGAAAGAAGACTTACTAAAAGCTGGAGTGATAGAAAgtctttacat ... cctttcaaag-
EST: gi|110362242|gb|EC925762.1|EC925762
EST:     GGAAACCCATGTTGAGAAAGAAGACTTACTAAAAGCTAGAGTGATAGAAA                         G
genomic: GGAAACCGATTTTAAGAAAGAAGACTTACTAAAAGCTGGAGTGATAGAAAgtctttacat ... cctttcaaag-
EST: gi|45770742|gb|CN006594.1|CN006594
EST:     GGAAACCCATGTTGAGAAAGAAGACTTACTAAAAGCTAGAGTGATAGAAA                         G
genomic: GGAAACCGATTTTAAGAAAGAAGACTTACTAAAAGCTGGAGTGATAGAAAgtctttacat ... cctttcaaag-
EST: gi|45770742|gb|CN006594.1|CN006594
EST:     GGAAACCCATGTTGAGAAAGAAGACTTACTAAAAGCTAGAGTGATAGAAA                         G
genomic: GGAAACCGATTTTAAGAAAGAAGACTTACTAAAAGCTGGAGTGATAGAAAgtctttacat ... cctttcaaag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttacattctcctttcaaagTTTTGGGATCACGAGCTTGCTTGCATGGCGAGCATGTGTACCGTTTGATACTGACCAGAGTTTTTATCTTTTTACATGGTCGGAAAAATGCAGAATTAAA
                                                                tctttacattctcctt  CT-rich tract
                                   tttacatt  TA-rich tract