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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatggattttgagtttatcttgaaaactttctgggttcccggtaatgcttttaagggtatatctgggtttggggaaaatgcagcaaattcgaatgagttgaaatcaggagtcatgcttaagttagaaatctctggcctttcttctcagGTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGACGAAGGAAGCTCTTTCTCTAGAATGGTCCGAAGTACAGGGGCTGCAAATGCCCAGTACTTAC

Basic information

species Vitis vinifera
transcript Vv10s0003g04470.t01
intron # 26
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110710922|gb|EE087531.1|EE087531
EST:     TAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAG                         GTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGACGAAGGAAGCTCT
genomic: TAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAGgtatgcatgg ... ttcttctcagGTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGACGAAGGAAGCTCT
EST: gi|110373883|gb|EC938305.1|EC938305
EST:     TAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAG                         GTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGA
genomic: TAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAGgtatgcatgg ... ttcttctcagGTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGA
EST: gi|110695705|gb|EE074026.1|EE074026
EST:     TAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAG                         GTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGACGAAGGAAGCTCT
genomic: TAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAGgtatgcatgg ... ttcttctcagGTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGACGAAGGAAGCTCT
EST: gi|110711013|gb|EE087726.1|EE087726
EST:     TAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAG                         GTGGTANAGTATGATACTCCAGAAGAACTGCTTCAAGACGAAGGAAGCTCT
genomic: TAAATACCATCATTGATTGTGATCGGATTCTTGTCCTTGATGCTGGTCAGgtatgcatgg ... ttcttctcagGTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGACGAAGGAAGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttgaaatcaggagtcatgcttaagttagaaatctctggcctttcttctcagGTGGTAGAGTATGATACTCCAGAAGAACTGCTTCAAGACGAAGGAAGCTCTTTCTCTAGAATGGTCCGAAGTACAGGGGCTGCAAATGCCCAGTACTTAC
                                   tctctggcctttcttc  CT-rich tract
                       ttaagtta  TA-rich tract