1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
gtaatacctatcagtaaaatatgctctattttcttgtttttttatttctatttcaatggtatatttgttgagtacctctaagaaggatttattattgaaattctttttgtttgactaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCAGTCCACAAACTGCTAGGGACAGCTTTGGTTGACTGCAATGCTGCATCG
species | Vitis vinifera |
transcript | Vv09s0002g05110.t01 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: GCTGAGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAAC AAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCEST: gi|351056596|gb|FQ442424.1|FQ442424
genomic: GCTGAGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAACgtaataccta ... actaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGC
EST: CAAACGACAACCTGGTGTCAAC AAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCEST: gi|110692108|gb|EE070978.1|EE070978
genomic: CAAACGACAACCTGGTGTCAACgtaataccta ... actaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGC
EST: GCTGAGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAAC AAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCEST: gi|110361532|gb|EC925013.1|EC925013
genomic: GCTGAGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAACgtaataccta ... actaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGC
EST: AGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAAC AAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCEST: gi|110700342|gb|EE078274.1|EE078274
genomic: AGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAACgtaataccta ... actaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGC
EST: GCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAAC AAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCEST: gi|110385151|gb|EC949648.1|EC949648
genomic: GCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAACgtaataccta ... actaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGC
EST: GCTGAGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAAC ---TGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCEST: gi|110715995|gb|EE090587.1|EE090587
genomic: GCTGAGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAACgtaataccta ... actaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGC
EST: GCTGAGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAAC AAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGC
genomic: GCTGAGGCTATCAAATTAATTGAAGATTCAAACGACAACCTGGTGTCAACgtaataccta ... actaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGC
tgagtacctctaagaaggatttattattgaaattctttttgtttgactaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCAGTCCACAAACTGCTAGGGACAGCTTTGGTTGACTGCAATGCTGCATCG
gactaaa putative branch site (score: 2)
atttattattgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacctatcagtaaaatatgctctattttcttgtttttttatttctatttcaatggtatatttgttgagtacctctaagaaggatttattattgaaattctttttgtttgactaaattagAAGTGAAGCACTTGCACCAGCCAGGAAATGGAAACTTAAAGACTGTATTGCAGTCCACAAACTGCTAGGGACAGCTTTGGTTGACTGCAATGCTGCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC