1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
...tctggtggtagcccttcattgtccttatgcattcatacatgtacagatctattatgtcttgttggattttaacttaaattagttatttggggtggtacagATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATT
species | Vitis vinifera |
transcript | Vv14s0128g00100.t01 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: TGGATTCAAAGATTCACCATAATAACCTTCTTAACAACATACTTGCAAAG ATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGATEST: gi|33409556|gb|CF215183.1|CF215183
genomic: TGGATTCAAAGATTCACCATAATAACCTTCTTAACAACATACTTGCAAAGgtattgtcct ... ggtggtacagATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGAT
EST: TGGATTCAAAGATTCACCATAATAACCTTCTTAACAACATACTTGCAAAG ATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGATEST: gi|22014530|gb|BQ799564.1|BQ799564
genomic: TGGATTCAAAGATTCACCATAATAACCTTCTTAACAACATACTTGCAAAGgtattgtcct ... ggtggtacagATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGAT
EST: TAATAACCTTCTTAACAACATACTTGCAAAG ATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGATEST: gi|161706689|gb|FC055067.1|FC055067
genomic: TAATAACCTTCTTAACAACATACTTGCAAAGgtattgtcct ... ggtggtacagATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGAT
EST: TGGATTCAAAGATTCACCATAATAACCTTCTTAACAACATACTTGCAAAG ATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGAT
genomic: TGGATTCAAAGATTCACCATAATAACCTTCTTAACAACATACTTGCAAAGgtattgtcct ... ggtggtacagATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGAT
gatctattatgtcttgttggattttaacttaaattagttatttggggtggtacagATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATT
ttttaac putative branch site (score: 2)
ttggattttaacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctggtggtagcccttcattgtccttatgcattcatacatgtacagatctattatgtcttgttggattttaacttaaattagttatttggggtggtacagATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- tggtggt
- - - - - -cccttca
- - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacttaaa