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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctcttggacattgcttcttttttctcctttgatgctgtgagttgtgtttattctgcttaaattgcatagtaaatgcttctgtttcttcctgttatgtagTCAGTTGCATGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAAACACAAAG

Basic information

species Vitis vinifera
transcript Vv09s0002g05110.t01
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110692108|gb|EE070978.1|EE070978
EST:     ACAGAGAAGCTCATTTGGAGTGTTTTAGAAGCAGAGCGCCCTAGTTTCAG                         TCAGTTGCATGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAA
genomic: ACAGAGAAGCTCATTTGGAGTGTTTTAGAAGCAGAGCGCCCTAGTTTCAGgttctcttgg ... tgttatgtagTCAGTTGCATGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAA
EST: gi|110385151|gb|EC949648.1|EC949648
EST:     ACAGAGAAGCTCATTTGGAGTGTTTTAGAAGCAGAGCGCCCTAGTTTCAG                         TCAGTTGCATGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAA
genomic: ACAGAGAAGCTCATTTGGAGTGTTTTAGAAGCAGAGCGCCCTAGTTTCAGgttctcttgg ... tgttatgtagTCAGTTGCATGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttattctgcttaaattgcatagtaaatgcttctgtttcttcctgttatgtagTCAGTTGCATGGAAAATCTCTCACCGAGGCGAACATCTCTTTCCTTGAGAAACACAAAG
                               cttctgtttcttcctg  CT-rich tract
                     atagtaaat  TA-rich tract