1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...cccttttcatcaatttgaatgtaatttctccaacatacatgtggttatttcataccattgtttcccagtctaattgtttgtgtgaaatgtgcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCGCACGGTTACACTGCGCGATAGCTACGGTAAAGGTGGGAAGTAGGTGGC
species | Vitis vinifera |
transcript | Vv15s0021g01230.t01 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTG GCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTTTTCAACCEST: gi|30126520|gb|CB911859.1|CB911859
genomic: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTGgtagacacta ... gcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
EST: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTG GCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCEST: gi|22009286|gb|BQ794320.1|BQ794320
genomic: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTGgtagacacta ... gcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
EST: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTG GCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCEST: gi|46918000|gb|CN547329.1|CN547329
genomic: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTGgtagacacta ... gcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
EST: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTG GCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCEST: gi|22008319|gb|BQ793353.1|BQ793353
genomic: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTGgtagacacta ... gcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
EST: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTG GCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCEST: gi|30330123|gb|CD013385.1|CD013385
genomic: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTGgtagacacta ... gcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
EST: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTG GCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCEST: gi|30329220|gb|CD012482.1|CD012482
genomic: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTGgtagacacta ... gcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
EST: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTG GCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCEST: gi|22009340|gb|BQ794374.1|BQ794374
genomic: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTGgtagacacta ... gcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
EST: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTG GCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
genomic: ATCACTTAAAAATGCTGCAGTTGGAGACAGATTTCAATTTGAAAGGCTTGgtagacacta ... gcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACC
tatttcataccattgtttcccagtctaattgtttgtgtgaaatgtgcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCGCACGGTTACACTGCGCGATAGCTACGGTAAAGGTGGGAAGTAGGTGGC
gtctaat putative branch site (score: 3)
taattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttttcatcaatttgaatgtaatttctccaacatacatgtggttatttcataccattgtttcccagtctaattgtttgtgtgaaatgtgcaattccagGCTATTTTGTTGTGGATAAGGACTCGACTCCGGAAAAACTCGTCTTCAACCGCACGGTTACACTGCGCGATAGCTACGGTAAAGGTGGGAAGTAGGTGGC
ccctttt
- - - - - - - - - - - - - -ctccaac
- - - - - - - - - - - - - - - - - - -catgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - catacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtga