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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaacttttctatatttccgacctaaaaatttctatgaaaatatttttcagtgtttacatactgaataattctttttgcagGTGGTGACTTACTTCTTTTACAAGAATCTTACTTTCACTTTGACTCAATTCTGGTTCACCTTCCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATT

Basic information

species Vitis vinifera
transcript Vv00s0189g00030.t01
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: LOC_Os10g27220.2 (Oryza sativa), 3'ss of exon 1
gtttaacttttctatatttccgacctaaa-aatttctatgaaaatatttttcagtgtttacatactgaataattctttttgcagGTGGTGACTTACTTCTTTTACAAGAATCTTACTTTCACTTTGACTCAATTCTGGTTCACCTTCCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATT
            |||| ||  |  ||    | | |  ||     |||  ||||        ||     ||  ||  | ||||||||  | || || || || ||||||||||| || || ||  | ||||| ||||||||||| ||||||||||| ||||| |||||  |||| |||||||| |
-----------gtatagtttagttctttgcagtgtagatttgtgtatagttcaagaaactgatgactgatgctttctgttgcagGTTATCACATATTTTTTCTACAAGAATCTGACATTTACGCTAACTCAGTTCTGGTTCACTTTCCAAACTGGTTTTTCCGGTCAGCGATTTTATGATGACT

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GRMZM2G020553_T01 (Zea mays), 3'ss of exon 2
gtttaacttttctatatttccgacctaaaaatttctatgaaaatatttttcagtgtttacatactgaataattctttttgcagGTGGTGACTTACTTCTTTTACAAGAATCTTACTTTCACTTTGACTCAATTCTGGTTCACCTTCCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATT
     |   || ||  |   | || | ||     ||| | | ||| ||   |||  | | |||    ||   |  | ||||||||  | || |||||||| ||||||||||| || || ||  | ||||| ||||||||||| || |||||||| |||||||| ||  | || |||||||| |
---gtatggttatagttgctcaactttaa----ccta-gcatatagttcaaagtactga-atatgagatg--ttctgttgcagGTTATCACATACTTCTTCTACAAGAATCTGACATTTACACTAACTCAGTTCTGGTTCACTTTTCAAACTGGTTTTTCTGGCCAGCGGTTTTATGATGACT

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 23
gtttaacttttctatatttccgacctaaaaatttctatgaaaatatttttcagtgtttacatactgaataattctttttgcagGTGGTGACTTACTTCTTTTACAAGAATCTTACTTTCACTTTGACTCAATTCTGGTTCACCTTCCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATT
|| |||  |||   ||  | | |  || |        || || | ||| |  ||  | |||   | | |  |  || |||||||| ||||  |||||||||||||||||||| ||||||||| | || || || ||||| || || |||||||||||||||||||| ||||||||||||||||
gtataatgttttgttaactgcaatgtata----ctagtgtaactgtttatttgtaataacac-ttaagt--tggttattgcagGTTGTGATATACTTCTTTTACAAGAATCTCACTTTCACTCTTACCCAGTTTTGGTTTACATTTCAAACTGGGTTTTCTGGTCAGAGATTCTATGATGATT

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: GLYMA18G16990.1 (Glycine max), 3'ss of exon 15
gtttaacttttctatatttccgacctaaaaatttctatgaaaatatttttcagtgtttacatactgaataattctttttgcagGTGGTGACTTACTTCTTTTACAAGAATCTTACTTTCACTTTGACTCAATTCTGGTTCACCTTCCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATT
|| |||  |||   ||  | | |  ||    |     ||  | | ||| |  ||  | |||  |  | |  || ||   |||||| ||||  ||||||||||||||||| || || |||||| | ||||| || ||||| || || |||||||||||||||||||| ||||||||||||||||
gtataatgttttgttaactgcaatgta----tgctagtgttactgtttatttgtaataacactcaaattggttatt---gcagGTTGTGATATACTTCTTTTACAAGAACCTCACCTTCACTCTTACTCAGTTTTGGTTTACATTTCAAACTGGGTTTTCTGGTCAGAGATTCTATGATGATT

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: EFJ31523 (Selaginella moellendorffii), 3'ss of exon 23
gtttaacttttctatatttccgacctaaaaatttctatga---aaatatttttcagtgtttacatactgaataattctttttgcagGTGGTGACTTACTTCTTTTACAAGAATCTTACTTTCACTTTGACTCAATTCTGGTTCACCTTCCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATT
                               ||  ||||    |||| | |     | |       || |||  | |   || ||||| ||||  || |||||||||||||||||||| ||||| ||||| || ||||||||||  | | | ||||| |||||||| ||| | ||||| || || |
------------------------------gttcgtatggttcaaatgtctcgttttatcagtcctct-aatgctgccgctttcagGTCGTGAGCTATTTCTTTTACAAGAATCTTACGTTCACCTTGACGCAGTTCTGGTTCAATTGCTACACTGGTTTTTCTGGCCAACGGTTCTACGACGACT

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 22
lower sequence: EFJ38622 (Selaginella moellendorffii), 3'ss of exon 23
gtttaacttttctatatttccgacctaaaaatttctatga---aaatatttttcagtgtttacatactgaataattctttttgcagGTGGTGACTTACTTCTTTTACAAGAATCTTACTTTCACTTTGACTCAATTCTGGTTCACCTTCCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATT
                               ||  ||||    |||| | |     | |       || |||  | |   || ||||| ||||  || |||||||||||||||||||| ||||| ||||| || ||||||||||  | | | ||||| |||||||| ||| | ||||| || || |
------------------------------gttcgtatggttcaaatgtctcgttctatcagtcctct-aatgctgccgctttcagGTCGTGAGCTATTTCTTTTACAAGAATCTTACGTTCACCTTGACGCAGTTCTGGTTCAATTGCTACACTGGTTTTTCTGGCCAACGGTTCTACGACGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttctatgaaaatatttttcagtgtttacatactgaataattctttttgcagGTGGTGACTTACTTCTTTTACAAGAATCTTACTTTCACTTTGACTCAATTCTGGTTCACCTTCCAAACTGGGTTTTCTGGTCAAAGATTCTATGATGATT
                                           ttctttttgc  CT-rich tract
     tctatgaaaatatttt  TA-rich tract