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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgttttattttgttgttttgaagcaacttggctgaagtatcatgtcagctgaatattgagaaatcactattgttgtttgtagGTGACAAGCCTGGTCAAGAAAGGTGCACGGAAAATAACACTTAGTATTGGTGATGGTGCCAATGACGTCAGCATGATTCAAGCGGCTCATGTTGGCGTTG

Basic information

species Vitis vinifera
transcript Vv00s0189g00030.t01
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: LOC_Os10g27220.1 (Oryza sativa), 3'ss of exon 6
----------gtaagatgttttattttgttgttttgaagcaacttggctga--agtatcatg-tcagctgaatattgagaaatcactattgttgtttgtagGTGACAAGCCTGGTCAAGAAAGGTGCACGGAAAATAACACTTAGTATTGGTGATGGTGCCAATGACGTCAGCATGATTCAAGCGGCTCATGTTGGCGTTG
           |  | | | |||| ||  | | ||| |  |||||   ||   ||||  ||| | | ||| | |  |   |  |    |  |  | |||||||  | ||| | || ||||||||||| |  || ||||| || ||||||||||||||||| ||||| || || ||||||||||| |||||||| ||  |||
cagcagtcttatctggtttgttatatttatttcttgca-taacttatttggttagtacaatgctgaactgtaaacagctgacacttgctcatgttgtgtagGTTGCTAGCTTAGTTAAGAAAGGTGCCCATAAGATAACTCTCAGTATTGGTGATGGTGCTAATGATGTGAGTATGATTCAAGCTGCTCATGTGGGGATTG

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GRMZM2G020553_T01 (Zea mays), 3'ss of exon 1
--------gtaagatgttttattttgttgttttgaagcaacttggctgaagtatcatgtcagctgaatattgagaaat-----cactattgt-tgtttgtagGTGACAAGCCTGGTCAAGAAAGGTGCACGGAAAATAACACTTAGTATTGGTGATGGTGCCAATGACGTCAGCATGATTCAAGCGGCTCATGTTGGCGTTG
        |   |   |  | | |  ||| ||  | |    ||   || |   || |||   |   | | |   ||||     || || ||| | | ||||||| |||||| | || | ||| |||||   ||||||||| || || |||||||| ||||| ||||| || || ||||||||||| |||||||||||  |||
aagcaaatgggggcaatagtctctgattgattgcatg--gtttcattgcacagtcttgtatacgtgaaaatataaaatgctgacattaatgtgtatatgtagGTTACAAGCTTAGTTAGGAAGGGTGCTGAGAAAATAACTCTCAGCATTGGTGACGGTGCTAATGATGTGAGTATGATTCAAGCTGCTCATGTTGGGATTG

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA18G16990.1 (Glycine max), 3'ss of exon 14
--------gtaaga--tgttttattttgttgttttgaagcaacttggc-tgaagta--tcatgtcagctgaatattgagaaatcactattgttgtttgtagGTGACAAGCCTGGTCAAGAAAGGTGCACGGAAAATAACACTTAGTATTGGTGATGGTGCCAATGACGTCAGCATGATTCAAGCGGCTCATGTTGGCGTTG
        ||| ||  || || |  |   ||  | | || || ||||| |    ||  | |||  |  |    |||      |||||||   || ||  |||| || ||  ||||||||||||||||||  ||||| |||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||
cttagtgagtaggagttgcttaaagtaactgcctagtag-aatttggcgttgtttagcttatgaaaattttccattatttgttcactatatctgcttacagGTCACGAGTATGGTCAAGAAAGGTGCACAAAAAATTACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGCGTTG

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: GLYMA08G40530.1 (Glycine max), 3'ss of exon 22
---------gtaaga-tgttttattttgttgttttgaagcaacttggctgaagt---atcatgtcagctgaatattgagaaatcactattgttgtttgtagGTGACAAGCCTGGTCAAGAAAGGTGCACGGAAAATAACACTTAGTATTGGTGATGGTGCCAATGACGTCAGCATGATTCAAGCGGCTCATGTTGGCGTTG
         ||| || || || |  |  |||  | | || || |||||    ||    | |||  |  |    |||      |||||||   |||||  |||| || ||  ||||||||||||||||||  |||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||| ||||
gcttagtgagtaggagtgcttaaagtaattgcctagtag-aatttggcgttggttagcttatgaaaattttccattatttgttcactatatctgtttacagGTCACGAGTATGGTCAAGAAAGGTGCACAAAAAATAACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGGGTTG

upper sequence: Vv00s0189g00030.t01 (Vitis vinifera), 3'ss of exon 21
lower sequence: EFJ31523 (Selaginella moellendorffii), 3'ss of exon 22
gtaagatgttttattttgttgttttgaagcaacttggctgaagtatcatgtc-agctgaatattgagaaatcactattgttgtttgtagGTGACAAGCCTGGTCAAGAAAGGTGCACGGAAAATAACACTTAGTATTGGTGATGGTGCCAATGACGTCAGCATGATTCAAGCGGCTCATGTTGGCGTTG
                                    |     || || | || |  ||  | ||  ||  |    |||  | || | |||| || |  || || ||  | || ||   |||||||||  | || |||||||||||||| || ||||| |||||||||||||| |||||| | || ||||
------------------------------------gtaagtgtttcctttccatttgtgtgttttgatcttgtaatt-ctattggcagGTAACGAAACTAGTGAAAGACGGAGCCAAGAAAATAACTTTAAGCATTGGTGATGGTGCTAACGACGTGAGCATGATTCAAGCTGCTCATATCGGGGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggctgaagtatcatgtcagctgaatattgagaaatcactattgttgtttgtagGTGACAAGCCTGGTCAAGAAAGGTGCACGGAAAATAACACTTAGTATTGGTGATGGTGCCAATGACGTCAGCATGATTCAAGCGGCTCATGTTGGCGTTG
                      tgaatatt  TA-rich tract