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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattttcctgccctttcctttgttttacagatcatgaaacggaaatttttattgtcttttttgattaaggttgcaattccatctgtgacctttttcagGTATGCAAGGTGCACCCGCTCTGTCTCCATAG

Basic information

species Vitis vinifera
transcript Vv06s0061g01040.t01
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390755|gb|EC955682.1|EC955682
EST:     AAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACAC                         GTATGCAAGGTGCACCCGCTCTGTCTCCATAG
genomic: AAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACACgtaagatttt ... cctttttcagGTATGCAAGGTGCACCCGCTCTGTCTCCATAG
EST: gi|30133651|gb|CB918990.1|CB918990
EST:     AAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACAC                         GTATGCAAGGTGCACCCGCTCTGTCTCCATAG
genomic: AAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACACgtaagatttt ... cctttttcagGTATGCAAGGTGCACCCGCTCTGTCTCCATAG
EST: gi|110374283|gb|EC938965.1|EC938965
EST:     AAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACAC                         GTATGCAAGGTGCACCCGCTCTGTCTCCATAG
genomic: AAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACACgtaagatttt ... cctttttcagGTATGCAAGGTGCACCCGCTCTGTCTCCATAG
EST: gi|110401223|gb|EC967826.1|EC967826
EST:     AAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACAC                         GTATGCAAGGTGCACCCGCTCTGTCTCCATAG
genomic: AAGTTCACGGCAGATATCTTGCAAATTCTTACAAATAATTTGTGTTACACgtaagatttt ... cctttttcagGTATGCAAGGTGCACCCGCTCTGTCTCCATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttttattgtcttttttgattaaggttgcaattccatctgtgacctttttcagGTATGCAAGGTGCACCCGCTCTGTCTCCATAG
               ttttgat  putative branch site (score: 4)
                                             cctttttc  putative PPT
     ttattgtctttttt  TA-rich tract