Sequence
atgc intronic sequence ATGC exonic sequencegtgagatttctgaattctctccttcgctttatttattgatacatgttgatttggtagtaaattgcatctacttgtttggccaatgcaagATAAGGACCAAGAACAGTTCACCAAGCAACTCTTGTACTATCTTGGCGCTTTTGCTGGAGGAATTCCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G074103_T04 (Zea mays), 3'ss of exon 2
-gtgagatttctgaattctctccttcgctttatttattgatacat--gttgatttggtagtaaatt---gcatctacttgtttggccaatgcaagATAAGGACCAAGAACAGTTCACCAAGCAACTCTTGTACTATCTTGGCGCTTTTGCTGGAGGAATTCCG--------------------------
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cctatagctaaaggttcatttgtgctatttaaattggttgtacaatagccacttcggttgtttgtttatacatgttttgtgttttcttttgcaagataagGATCAAGAGAAGTTTACCACACAACTGCTCTACTATCTGGGTGCCTTTGCTGGAGGAATTCCGGTGAGCATATTGCTGCTCTTTTGTAG
upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G074103_T03 (Zea mays), 3'ss of exon 2
------gtgagatttctgaattctctccttcgctttatttattgatacat--gttgatttggtagtaaatt---gcatctacttgtttggccaatgcaagATAAGGACCAAGAACAGTTCACCAAGCAACTCTTGTACTATCTTGGCGCTTTTGCTGGAGGAATTCCG--------------------------
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gtctccctatagctaaaggttcatttgtgctatttaaattggttgtacaatagccacttcggttgtttgtttatacatgttttgtgttttcttttgcaagATAAGGATCAAGAGAAGTTTACCACACAACTGCTCTACTATCTGGGTGCCTTTGCTGGAGGAATTCCGGTGAGCATATTGCTGCTCTTTTGTAG
upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G074103_T01 (Zea mays), 3'ss of exon 2
------gtgagatttctgaattctctccttcgctttatttattgatacat--gttgatttggtagtaaat---tgcatctacttgtttggccaatgcaagATAAGGACCAAGAACAGTTCACCAAGCAACTCTTGTACTATCTTGGCGCTTTTGCTGGAGGAATTCCG
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gtctccctatagctaaaggttcatttgtgctatttaaattggttgtacaatagccacttcggttgtttgtttatacatgttttgtgttttcttttgcaagATAAGGATCAAGAGAAGTTTACCACACAACTGCTCTACTATCTGGGTGCCTTTGCTGGAGGAATTCCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgatacatgttgatttggtagtaaattgcatctacttgtttggccaatgcaagATAAGGACCAAGAACAGTTCACCAAGCAACTCTTGTACTATCTTGGCGCTTTTGCTGGAGGAATTCCG
tagtaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagatttctgaattctctccttcgctttatttattgatacatgttgatttggtagtaaattgcatctacttgtttggccaatgcaagATAAGGACCAAGAACAGTTCACCAAGCAACTCTTGTACTATCTTGGCGCTTTTGCTGGAGGAATTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA