Sequence
atgc intronic sequence ATGC exonic sequencegttagtatctatatactaagcatgaccaaggtttatttgtatcgagcatgttgtaatgcatatggagcatgaacatattttgttttgtatgtctattctattgacactctcagtttgtctacttgtcaactcttcttctcttttcagGAGGAAGTGCCAATCGTCAATTTTGCTGCAACTGGCATTATTCGTTGTAGAAGATGTCGCACATATGTGAATCCGTATGTGACATTTACTGATGGTGGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G41400.2 (Glycine max), 3'ss of exon 2
gttagtatctatatactaagcatgaccaaggtttatttgtatcgagcatgttgtaatgcatatggagcatgaacatattttgttttgtatgtctattc-tattgacactctcagtttgtctacttgtcaactcttcttctcttttcagGAGGAAGTGCCAATCGTCAATTTTGCTGCAACTGGCATTATTCGTTGTAGAAGATGTCGCACATATGTGAATCCGTATGTGACATTTACTGATGGTGGCA
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--------------------------------------------------------------gttagtgcttctttaccctgtttgatgagcagaaacatactaggtcatgtaattt--tcaattattcactgttttt-tattttcagGAAGAGGTGCCTATAGTTAATTTTGCTCCAGCTAGTGTTGTCCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACGGAAGCTGGAA
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G38830.1 (Glycine max), 3'ss of exon 1
gttagtatctatatactaagcatgaccaaggtttatttgtatcgagcatgttgtaatgcatatggagcatgaacatattttgttttgtatgtctattc-tattgacactctcagtttgtctacttgtcaactcttcttctcttttcagGAGGAAGTGCCAATCGTCAATTTTGCTGCAACTGGCATTATTCGTTGTAGAAGATGTCGCACATATGTGAATCCGTATGTGACATTTACTGATGGTGGCA
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--------------------------------------------------------------gttagtgcttctttaccctgtttgatgagcagaaacatactggg--tcatgttattttcaattatttgctgttctt-tgttttcagGAAGAGGTGCCTATAGTTAATTTTGCTCCAGCTAGTGTTGTCCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACGGAAGCTGGAA
upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G28520.1 (Glycine max), 3'ss of exon 2
gttagtatctatatactaagcatgaccaaggtttatttgtatcgagcatgtt-gtaatgca-tatggagcatgaacatattttgttttgtatgtctattctattgacactctcagtttgtctacttgtcaactcttcttctcttttcagGAGGAAGTGCCAATCGTCAATTTTGCTGCAACTGGCATTATTCGTTGTAGAAGATGTCGCACATATGTGAATCCGTATGTGACATTTACTGATGGTGGCA
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-------------------------------------------------gttagtgcctcactattctgtttgattggcagttactcatactggccatgttgttttttttctttgtgcat-tactgctcttatgtttctttgatttcagGAAGAGGTACCCATAGTTAATTTTGCCGCATCTGCCGTTGTACGTTGTAGGAGATGCTGCACATATGTCAATCCATATGTGACATTTACTGAAGGTGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattctattgacactctcagtttgtctacttgtcaactcttcttctcttttcagGAGGAAGTGCCAATCGTCAATTTTGCTGCAACTGGCATTATTCGTTGTAGAAGATGTCGCACATATGTGAATCCGTATGTGACATTTACTGATGGTGGCA
tattgac putative branch site (score: 2)
tctacttgtcaactct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtatctatatactaagcatgaccaaggtttatttgtatcgagcatgttgtaatgcatatggagcatgaacatattttgttttgtatgtctattctattgacactctcagtttgtctacttgtcaactcttcttctcttttcagGAGGAAGTGCCAATCGTCAATTTTGCTGCAACTGGCATTATTCGTTGTAGAAGATGTCGCACATATGTGAATCCGTATGTGACATTTACTGATGGTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG