Sequence
atgc intronic sequence ATGC exonic sequence...ttattttttcttttcttttcttttccttctttctttctttctttctttctctccctctttctttttctagacaactcacatgagttaaacgatttcgtagGTGAGGCCGTTTATGTGGATGACATTCCTTCTCCAACAAATTGCCTACATGGGGCTTTCATTTATAGTACAAAGCCTTTGGCTCGAGTAAAGGGTATCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0041g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G44000.1 (Glycine max), 3'ss of exon 2
ttattttttcttttcttttcttttccttctttctttctttctttctttctctccctctttctttttctagaca--actcacatgagtta--aacgatttcgtagGTGAGGCCGTTTATGTGGATGACATTCCTTCTCCAACAAATTGCCTACATGGGGCTTTCATTTATAGTACAAAGCCTTTGGCTCGAGTAAAGGGTATCAA
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----tttcatttttagttgttttaatttcatatcagttgcaagtatatatttatcaatatatgtcaccaagtatcactgatatttattaataattcatatatagGTGAGGCTGTGTTTGTTGATGACATTCCATCACCAAAAAATTGCCTACATGGAGCATATATCTATAGTTCAAAACCTTTAGCAAGGGTAAAGAGTATAAA
upper sequence: Vv18s0041g02430.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G04950.1 (Glycine max), 3'ss of exon 2
ttattttttcttttcttttcttttccttctttctttctttctttctttctctccctctttctttttctagacaactcacatgagttaa--acgat--ttcgtagGTGAGGCCGTTTATGTGGATGACATTCCTTCTCCAACAAATTGCCTACATGGGGCTTTCATTTATAGTACAAAGCCTTTGGCTCGAGTAAAGGGTATCAA
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---tatcctgttttggtgcctgttaattataactttttatgtttaattgtttaaattttt-tttcagtaacaagtacatatttatgaataatcatcatgtatagGTGAGGTTGTGTTTGTGGATGACATTCCATCACCAGCAAATTGCTTACATGGAGCATATATTTATAGTGCAAAACCTTTAGCAAGGGTTAGGAGTATAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctctccctctttctttttctagacaactcacatgagttaaacgatttcgtagGTGAGGCCGTTTATGTGGATGACATTCCTTCTCCAACAAATTGCCTACATGGGGCTTTCATTTATAGTACAAAGCCTTTGGCTCGAGTAAAGGGTATCAA
aactcac putative branch site (score: 2)
tttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttattttttcttttcttttcttttccttctttctttctttctttctttctctccctctttctttttctagacaactcacatgagttaaacgatttcgtagGTGAGGCCGTTTATGTGGATGACATTCCTTCTCCAACAAATTGCCTACATGGGGCTTTCATTTATAGTACAAAGCCTTTGGCTCGAGTAAAGGGTATCAA
- - - - - - - - - - - -tccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgagt