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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacccttctctccatgggaaactgctcaatttgaaacaatcagttacttatgcattgcaaaatcatattcctttggaaattgtcattgttgacattttgaggtgttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG

Basic information

species Vitis vinifera
transcript Vv18s0001g10090.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G35780.1 (Glycine max), 3'ss of exon 2
gtaaacccttctctccatgggaaactgctcaatttgaaacaa-tcagttacttatgcattgcaaaatcatattcctttggaaattgtcattgttgacattttgaggtgttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG
                ||    | | ||| ||    |||||| | |  | |   | || |    | |  |    | |||| |  || |||| |   || |        ||||||||||| |||||||||||||||||||||||||||||||| |||||  |||  |||  |||| |||| |||| ||| |||| | |  |||| ||||| ||||
--------------gtataatta-cagctaaaggaaaaacaagttaaatgccattacacttatgacttcttcctccttggtatatgacatttt---cactcca-----ttgcagACAGGTTCTGGGAAAACATACACCATGGGCACTGGCTTTAAAGATGGTTGCCAAGAGGGAATAATACCTCTAGTTATGAGTTCCCTGTTTAACAAAATTG

upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G09390.1 (Glycine max), 3'ss of exon 2
gtaaacccttctctccatgggaaactgctcaatttgaaacaatcagttacttatgcattgcaaaatcatattcctttggaaattgtcattgttgacattttgaggtgttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG
    |   ||    | |   |||||     | ||  |  | || |   |||||||  ||      ||||    | |||| |  || |||| |   || |        ||||||||||| |||||||||||||||||||||||||||||||| |||||  |||  |||  |||| |||| || ||||| |||| | || |||| ||||| ||||
--gtatagttacagctaaaagaaaca--caagttaaatgccatta--cacttatgacttat----tcattcctccttggtatgtgacatttt---cactcca-----ttgcagACAGGTTCTGGGAAAACATACACCATGGGCACTGGCTTTAAAGATGGTTGCCAAGAGGGAATAATACCCCAAGTTATGAGTTCTCTGTTTAACAAAATTG

upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G04520.1 (Glycine max), 3'ss of exon 2
gtaaacccttctctccatgggaaactgctcaatttgaaacaatcagttacttatgcattgcaaaatcatattcctttggaaattgtcattgttgacattttgaggtgttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG
                          |   | |||     ||      | |||     | | | |     |  |||  | | ||| || | |   || | |       |||||||||| ||||||||||| ||||||||||| |||||||| |||||  ||| |||||  ||| || | || ||||| ||||||| |||||| | ||| ||||
--------------------------gtatagtttctgctaaaggaaaagttacatgctactacactg-gtctcttatgcatttgacacttt---cactcta-----ctgcagACAGGTTCTGGGAAAACGTACACCATGGGAACTGGCTTTAAAGATGGTTGTCAAACAGGAATAGTACCCCAAGTTATGAATGTTTTGTTTAGCAAAATTG

upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G04380.1 (Glycine max), 3'ss of exon 2
gtaaacccttctctccatgggaaactgctcaatttgaaacaatcagttacttatgcattgcaaaatcatattcctttggaaattgtcattgttgacattttgaggt-gttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG
                || |  | ||||| ||   ||||||   |||||| |   || |  | | |  |  ||  ||     ||| ||||  ||||| ||| |      |||||||||| ||||||||||| ||||||||||| |||||||| || ||  ||| |||||  ||| || | || ||||| ||||||| |||||| | ||| ||||
--------------gtatagtta-ctgctaaag--gaaacaga-agttacatgc-cact--agactggtggtctctt-----ttg-catt--tgacactttcactccactgcagACAGGTTCTGGGAAAACGTACACCATGGGAACTGGCTTTAAGGATGGTTGTCAAACAGGAATAGTACCCCAAGTTATGAATGTTTTGTTTAGCAAAATTG

upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S237_18V6.1 (Physcomitrella patens), 3'ss of exon 2
gtaaacccttctctccatgggaaactgctcaatttgaaacaatcagttacttatgcattgcaaaatcatattcctttggaaattgtcattgttgacattttgaggt-gttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTT----CTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG
               | || |  | | |  |   |   |   | | |||  |||   |     ||| ||||| | | |    |  || | |    | ||||    |  | ||||||||||||||||||||| ||||||||||| ||||||| || ||   |      | |  |||||   | | || ||||| ||| |  |  | || || |  |   
----------actaacgtgagtgagtcccaagaattcgat--tgacttaaatataggtca-ggaattatatttcat-gtgtttactcgtggcgttcgttttcctttcatcgcagACAGGATCTGGGAAAACTTACACCATGGGAACTGGCTACACAGTTGGAGGCAGCACTGATGGGGTCA-TACCACAAGTTATGCAGACAATTTTTAAGAGAA---

upper sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S98_189V6.1 (Physcomitrella patens), 3'ss of exon 2
gtaaacccttctctccatgggaaactgctcaatttgaaacaatcagttac----ttatgcattgcaaaatcatattcctttggaaattgtcattgttgaca-ttttgaggtgttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGAC---TAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG
                   ||||   | |  | ||||||| |    ||       |   |||||   | |  |         ||||    |  |     |  ||||  |||| ||||||| |||||||||||||||||||| ||||| || || | || ||   |       |  | |    | ||||| ||||| ||| |  |  | ||||| |  |   
------------------tggaataggattgaattgaaacgagagtttttgccgctgcacattgtttattggttgcgtaacagaaaacccctctcccccctctttttcggtgctgcagACCGGATCTGGGAAAACATACACAATGGGAACGGGTTACACAGTTGGAGGGAGCACTGAAGGTGTCATCCCCCAAGTTATGCAGACGATTTTCAAGAGAA---


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaaaatcatattcctttggaaattgtcattgttgacattttgaggtgttgcagACAGGATCTGGGAAAACATACACCATGGGCACTGGCTTCAAAGACAGTTCTCAAATGGGACTAATCCCTCAAGTGATGAATGCTTTGTTCAACAAGATTG
                               tgttgac  putative branch site (score: 3)
     aatcatatt  TA-rich tract