Sequence
atgc intronic sequence ATGC exonic sequencegtaaaagccacaaaaaataacttatatattttccctaattttttatcagaaagtacttgatctcatgcaagagagacaagagtgggggatgaatgatgagggagaggtgtttgatccaaaatgctttttttttcctcccatttcatttgttgttttgagatgtaaagttgcgttctttttgtttttctttttgtctacagGAGGAAGTAGGACAGGTTTTGAAGAACAGACCAAGAACTGGGCACTCTCTACAAACTGCAGTATACTTGCAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g02460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G05830.1 (Glycine max), 3'ss of exon 4
gtaaaagccacaaaaaataacttatatattttccctaattttttatcagaaagtacttgatctcatgcaagagagacaagagtgggggatgaatgatgagggagaggtgtttgatccaaaatgctttttttttcctcccatttcatttgttgttttgagatgtaaagttgcgttcttttt-gtttttctttttgtctacagGAGGAAGTAGGACAGGTTTTGAAG---AACAGACCAAGAACTGGGCACTCTCTACAAACTGCAGTATACTTGCAGAG-----------------------
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---------------------------------------------------------------------------------gtttcttttcatttttagttttgtttgttataacatgtgttattgctttcgttttctcattcggattgttgctt-gagatgtaaagttatattcttttttgtttttctttttgtctacagGCGCAAGTAGGACAGTGCTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGTCTATTATTCTACATCCTCCTT
upper sequence: Vv17s0000g02460.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G33850.1 (Glycine max), 3'ss of exon 2
gtaaaagccacaaaaaataacttatatattttccctaattttttatcagaaagtacttgatctcatgcaagagagacaagagtgggggatgaatgatgagggagaggtgtttgatccaaaatgctttttttttcctcccatttcatttg--ttgtt--ttgagatgtaaagttgcgttcttttt-gtttttctttttgtctacagGAGGAAGTAGGACAGGTTTTGAA---GAACAGACCAAGAACTGGGCACTCTCTACAAACTGCAGTATACTTGCAGAG
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---------------------------------------------------------------------------------------------------------tttgtttgttattacatgtgttattgctttccttttctcattcggattgttgcttgagatgtaaagttatattcttttttgtttttctttttgtctacagGCGCAAGTAGGACAGTGTTTGAAGTTGATCAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgttgttttgagatgtaaagttgcgttctttttgtttttctttttgtctacagGAGGAAGTAGGACAGGTTTTGAAGAACAGACCAAGAACTGGGCACTCTCTACAAACTGCAGTATACTTGCAGAG
ttgcgttctttttgtt CT-rich tract
tttttgtttttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaagccacaaaaaataacttatatattttccctaattttttatcagaaagtacttgatctcatgcaagagagacaagagtgggggatgaatgatgagggagaggtgtttgatccaaaatgctttttttttcctcccatttcatttgttgttttgagatgtaaagttgcgttctttttgtttttctttttgtctacagGAGGAAGTAGGACAGGTTTTGAAGAACAGACCAAGAACTGGGCACTCTCTACAAACTGCAGTATACTTGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG