1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagctttattagtttctcgctgttttttttttatcaaaataattttgttatcaccatgaagatgtttggttcttagtggctgacccttaattggatgtagATTGTGGGCAAGAAAACACCCTGAAGCCTGGCGATGTGATTCAATGCCGTGAATGTGGTTACCGCATCTTGTACAAAAAGCGAACCCGTAGAA
species | Vitis vinifera |
transcript | Vv16s0115g00190.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tgttatcaccatgaagatgtttggttcttagtggctgacccttaattggatgtagATTGTGGGCAAGAAAACACCCTGAAGCCTGGCGATGTGATTCAATGCCGTGAATGTGGTTACCGCATCTTGTACAAAAAGCGAACCCGTAGAA
ttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagctttattagtttctcgctgttttttttttatcaaaataattttgttatcaccatgaagatgtttggttcttagtggctgacccttaattggatgtagATTGTGGGCAAGAAAACACCCTGAAGCCTGGCGATGTGATTCAATGCCGTGAATGTGGTTACCGCATCTTGTACAAAAAGCGAACCCGTAGAA
- - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccttaa