Sequence
atgc intronic sequence ATGC exonic sequencegtaaagggctctttatacttcattacatgttttttttttttttttcaatcagattatacttcattacatgttaattcacgaagtgcctataatgggttttatttgttgattgttctttttatattgcagTGAAGGTTTTGGTGTTTCTTACAATGCCTATTGAGGCTTCATCCAATGATATTTCACAACAGATAGAATATTTATGGGGGTTGAAGTCTTCAATTACACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g02170.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G52910.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaagggctctttatacttcattacatgttttttttttttttttcaatcagattatacttcattacatgttaattcacgaagtgcctataatgggttttatttgttgattgt--tctttttatattgcagTGAAGGTTTTGGTGTTTCTTACAATGCCTATTGAGGCTTCATCCAATGATATTTCACAACAGATAGAATATTTATGGGGGTTGAAGTCTTCAATTACACG
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----------------------------------------------gtactgagtttgctctgttgcccttaaataaaagtgtgatgctttgtaatttttctgatgagattgtgatctgtttttgtt-cagTTAAAGTGTTGGTGTTTCTTACAATGCCTATAGAGCCTTCTTCAGATGATATTCCTCAGCAGTTAGAGTATCTATGGGGATTGAAATCTGCAATTACTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcacgaagtgcctataatgggttttatttgttgattgttctttttatattgcagTGAAGGTTTTGGTGTTTCTTACAATGCCTATTGAGGCTTCATCCAATGATATTTCACAACAGATAGAATATTTATGGGGGTTGAAGTCTTCAATTACACG
tgttgat putative branch site (score: 4)
ttgttcttttt CT-rich tract
ttttatttgttgattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaagggctctttatacttcattacatgttttttttttttttttcaatcagattatacttcattacatgttaattcacgaagtgcctataatgggttttatttgttgattgttctttttatattgcagTGAAGGTTTTGGTGTTTCTTACAATGCCTATTGAGGCTTCATCCAATGATATTTCACAACAGATAGAATATTTATGGGGGTTGAAGTCTTCAATTACACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG