1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctcatgttttgtggtgggattttttattaaatgttattctttgttaaacaaagtagtgatatctcttatctctaatgtgttttctaacatccgatgcagTTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCCACAGGATTCAACCATTTCTTCCAGTGATGCTGATCAAAACCATGATAGTGTGGTTCCTGTTCT
species | Vitis vinifera |
transcript | Vv16s0039g02270.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCGCCTTTGCTTTCACTCTCTG TTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCTACAGGATTCAACCAEST: gi|110719175|gb|EE096848.1|EE096848
genomic: CTCGCCTTTGCTTTCACTCTCTGgtaactcttg ... tccgatgcagTTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCCACAGGATTCAACCA
EST: GATCTCGCCTTTGCCTTCACTCTCTG TTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCTACAGGATTCAACCAEST: gi|110686390|gb|EE063974.1|EE063974
genomic: GATCTCGCCTTTGCTTTCACTCTCTGgtaactcttg ... tccgatgcagTTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCCACAGGATTCAACCA
EST: TTCCCTCAACAATCGATCTCGCCTTTGCTTTCACTCTCTG TTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCCACAGGATTCAACCAEST: gi|110698756|gb|EE076614.1|EE076614
genomic: TTCCCTCAACAATCGATCTCGCCTTTGCTTTCACTCTCTGgtaactcttg ... tccgatgcagTTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCCACAGGATTCAACCA
EST: CAACAATCGATCTCGCCTTTGCCTTCACTCTCTG TTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCTACAGGATTCAACCA
genomic: CAACAATCGATCTCGCCTTTGCTTTCACTCTCTGgtaactcttg ... tccgatgcagTTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCCACAGGATTCAACCA
taaacaaagtagtgatatctcttatctctaatgtgttttctaacatccgatgcagTTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCCACAGGATTCAACCATTTCTTCCAGTGATGCTGATCAAAACCATGATAGTGTGGTTCCTGTTCT
ttctaac putative branch site (score: 1)
ttttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcatgttttgtggtgggattttttattaaatgttattctttgttaaacaaagtagtgatatctcttatctctaatgtgttttctaacatccgatgcagTTGGAGGCCTTCTGATGGAGATATCAAGTGAAAATCCACAGGATTCAACCATTTCTTCCAGTGATGCTGATCAAAACCATGATAGTGTGGTTCCTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-ctcatgt
- - - - - - tggtggg
- - - - - - - - - - - - - - - - - - - - - - - aaacaaa