Sequence
atgc intronic sequence ATGC exonic sequence...tgtagtgcttgaatgcatatatttgtatgaagatgcagttgattatacatttacatttctgtggtagttatttaaatttttgtttgggtaatatatgcagGTATTTTTGAGCGTTTCCGTGGAATTCTTCATGAAGGAGAAATAGACAAACGAGTTCAGTTTTTGATTGAAGGACTATTTGCTATCAGAAAAGCCAAGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0045g01110.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G41440.2 (Glycine max), 3'ss of exon 5
tgtagtgcttgaatgcat-atatttgtatgaagatgcagttgattat--acatttacatttctgtggtagttatttaaatttttgtttgggtaatatatgcagGTATTTTTGAGCGTTTCCGTGGAATTCTTCATGAAGGAGAAATAGACAAACGAGTTCAGTTTTTGATTGAAGGACTATTTGCTATCAGAAAAGCCAAGTT
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--aaatatgctaatgcaagacacttatgtatatgtgcaaatgatgcttgagatcaattttagtcttggaattttttgctaaataagatttataattt-tgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATTGAAGGTTTATTTGCAATAAGAAAAGCAAAGTT
upper sequence: Vv15s0045g01110.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G14770.1 (Glycine max), 3'ss of exon 4
tgtagtgcttgaatgcatatatttgtatgaagatgcagttgattatacatttacatttctgtggtagttatttaaatttttgtttgggtaatatatgcagGTATTTTTGAGCGTTTCCGTGGAATTCTTCATGAAGGAGAAATAGACAAACGAGTTCAGTTTTTGATTGAAGGACTATTTGCTATCAGAAAAGCCAAGTT----
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-----tgcaaga-cacttgtgtatatgtgcaaatgatgcttaagatcaattt-cagtcttggaattttttgctgaataggattt---ataattt-tgcaggtatttttgagCGTTTTCGTGGA-TTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATTGAAGGCTTATTTGCAATAAGAAAAGCGAAGTTTCAG
upper sequence: Vv15s0045g01110.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G24660.1 (Glycine max), 3'ss of exon 2
tgtagtgcttgaatgcat-atatttgtatgaagatgcagttgattatacatttacatttctgtg--gtagttatttaaatttttgtttgggtaatatatgcagGTATTTTTGAGCGTTTCCGTGGAATTCTTCATGAAGGAGAAATAGACAAACGAGTTCAGTTTTTGATTGAAGGACTATTTGCTATCAGAAAAGCCAAGTT
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--aaatatgctaatgcaagacacttatgtatacgtgcaaatgatgcttgagatcaatttcagtcttggaattttttgttaaataagttttataattt-tgcagGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTTCAGTTTCTGATAGAAGGCTTATTTGCAATAAGAAAAGCGAAATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacatttacatttctgtggtagttatttaaatttttgtttgggtaatatatgcagGTATTTTTGAGCGTTTCCGTGGAATTCTTCATGAAGGAGAAATAGACAAACGAGTTCAGTTTTTGATTGAAGGACTATTTGCTATCAGAAAAGCCAAGTT
ttatttaaatttttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtagtgcttgaatgcatatatttgtatgaagatgcagttgattatacatttacatttctgtggtagttatttaaatttttgtttgggtaatatatgcagGTATTTTTGAGCGTTTCCGTGGAATTCTTCATGAAGGAGAAATAGACAAACGAGTTCAGTTTTTGATTGAAGGACTATTTGCTATCAGAAAAGCCAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - gaatgca
- - - - - - - - - - - - - - - -gatgcag
- - - - - - - - - - - - - - - - - - - - - - - -catttac