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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatttttaagtccagaatcttcaaaagtttgtgcgtcggttaaaaacagggttgacactgatggttatctctatctgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGAGCAAAGAAGAGAGAATACTTCAGAATGCAGCGTGAACGCAAGAAAGCCA

Basic information

species Vitis vinifera
transcript Vv14s0068g01950.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01950.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os01g69950.1 (Oryza sativa), 3'ss of exon 2
gtcaatttttaagtccagaatcttcaaaagtttgtgcgtcggttaaaaacagggttgacactgatggttatctctatctgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGAGCAAAGAAGAGAGAATACTTCAGAATGCAGCGTGAACGCAAGAAAGCCA
|| ||  | |   |||    | |   ||  | |  || ||   | | ||  |  |  |    | |   | |  |  | |  ||  ||| |||| ||||||||||  |    ||| ||||| ||||| ||||||| ||||||||  |||||||| |||||| | ||||||||||||||||| || || |
gtgaaagtctgcatcctagctat---aacttgtcagcatctacttataattgtatctaagtggttttctgttgccttttcttttacagGTAAGTGTTTACCCATACGAGAAACAACCTGAGAACCCAAACAGTTACAGAGCAAGAAAGAGAGAGTACTTCCGCATGCAGCGTGAACGCAAAAAGGCAA

upper sequence: Vv14s0068g01950.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G145496_T01 (Zea mays), 3'ss of exon 2
-----------gtcaatttttaagt-ccagaatcttcaaaagtttgtgcgtcggttaaaaacagggttgacactg-----atggttatct--ctatct---gattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGAGCAAAGAAGAGAGAATACTTCAGAATGCAGCGTGAACGCAAGAAAGCCA
            | | ||  ||  | |   ||||| |      |||    | |  | | | | || |  ||||       ||| | ||||  ||| ||     ||   || | || |||||||||| ||      ||||||||||||| ||||||| |||||||| ||||||||| |||||| | |||| ||||||||| ||||| || |
gttagctgtatcttagttactacatactgaaatctgcttttacttgcatct-gactgagatctggttgcacaccagatatatgctcatctcactacctctcctttcatagGTTAGTGTTTACCCATATGAGAAGGAGCCTGAAAACCCAAACAGTTACAGAGCAAGGAAGAGAGAGTACTTCCGCATGCGGCGTGAACGGAAGAAGGCGA

upper sequence: Vv14s0068g01950.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G21150.1 (Glycine max), 3'ss of exon 2
gtcaatttttaagtccagaatcttcaaaagtttgtgcgtcggttaaaaac-----agggttgacactgatg-gttatct---ctatctgattg--gcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGAGCAAAGAAGAGAGAATACTTCAGAATGCAGCGTGAACGCAAGAAAGCCA
        |||| |  ||  || | | || |   ||    ||   | |||     |   || | | | | | | |||      | | |  ||    ||| | || ||||||||    |   |||||||||| ||||||||||| |  ||||||| ||||||||| |||||| || ||  |||||||||||| ||||| |
-------gttaaatg-agtttccttacaactagatggtgtggcctataaccctagaaaattcaaattaacgagctatgcaagttgtttatttattacagGTGAGTGTTTACCCTCAAGAAGTACAGCCTGAGAACCCCAACAGCTATAGAGCAAGGAAGAGAGAGTACTTCCGAGTGAGGCGTGAACGCAAAAAAGCTA

upper sequence: Vv14s0068g01950.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G28020.2 (Glycine max), 3'ss of exon 2
gtcaatttttaagtccagaatcttcaaa--agtttgtgcgtcggttaaaa----acagggttgacactgatg-gttatct---ctatctgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGAGCAAAGAAGAGAGAATACTTCAGAATGCAGCGTGAACGCAAGAAAGCCA
        |||| | ||   ||||  ||  || |  |  ||    || ||    | |   || | | | ||| | |||      ||| | | |  ||| | || ||||||||  | |   |||||||||| ||||||||||| |  ||||||| ||||||||| ||||||||  ||  |||||||||||| ||||  |
-------gttaaattcattttcttacaactagatgatatgtgtcctataaccctagaaaattcaaattaatgagctatgcaagttattttaata-cagGTGAGTGTTTACCCTCGAGAAGTACAGCCTGAGAACCCCAACAGCTATAGAGCAAGGAAGAGAGAGTACTTCAGGGTGAGGCGTGAACGCAAAAAAGTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584670|gb|CB007365.1|CB007365
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|351041165|gb|FQ444142.1|FQ444142
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|351033915|gb|FQ462970.1|FQ462970
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|351038980|gb|FQ457655.1|FQ457655
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|351049248|gb|FQ428991.1|FQ428991
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110375488|gb|EC940477.1|EC940477
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|351040811|gb|FQ438355.1|FQ438355
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110388116|gb|EC952834.1|EC952834
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110370744|gb|EC932829.1|EC932829
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110385398|gb|EC949919.1|EC949919
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|349809980|gb|FQ398605.1|FQ398605
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|22008820|gb|BQ793854.1|BQ793854
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110379132|gb|EC944308.1|EC944308
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110693422|gb|EE069638.1|EE069638
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110383557|gb|EC947936.1|EC947936
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110362243|gb|EC925763.1|EC925763
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|349829457|gb|FQ419989.1|FQ419989
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCACA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|37186612|gb|CF605965.1|CF605965
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|349829513|gb|FQ420045.1|FQ420045
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110385535|gb|EC950068.1|EC950068
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110380099|gb|EC945341.1|EC945341
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110686359|gb|EE063903.1|EE063903
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110381278|gb|EC946602.1|EC946602
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|32246221|gb|CD712040.1|CD712040
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|27755356|gb|CB036111.1|CB036111
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|351027061|gb|FQ439922.1|FQ439922
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|77589291|gb|DV223910.1|DV223910
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|349829940|gb|FQ422253.1|FQ422253
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|349821016|gb|FQ404269.1|FQ404269
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|30134966|gb|CB920304.1|CB920304
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|349808333|gb|FQ405477.1|FQ405477
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110381200|gb|EC946521.1|EC946521
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|37186033|gb|CF605386.1|CF605386
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|71885460|gb|DT034515.1|DT034515
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110376002|gb|EC941038.1|EC941038
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110381688|gb|EC935129.1|EC935129
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
EST: gi|110417269|gb|EC983310.1|EC983310
EST:     TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAG                         ATAAGCGTTTACCCACGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA
genomic: TGATTGATGGATTAGTCAAATTTGAGAAGTTTGGGCCTGATAGGAAAAAGgtcaattttt ... tgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcgtcggttaaaaacagggttgacactgatggttatctctatctgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGAGCAAAGAAGAGAGAATACTTCAGAATGCAGCGTGAACGCAAGAAAGCCA
                                     tctctatct  CT-rich tract
         ttaaaaaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcaatttttaagtccagaatcttcaaaagtttgtgcgtcggttaaaaacagggttgacactgatggttatctctatctgattggcagATAAGCGTTTACCCATGTGTTTTACAGCCTGAAAACCCCAACAGTTGCAGAGCAAAGAAGAGAGAATACTTCAGAATGCAGCGTGAACGCAAGAAAGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA